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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.683137 (48 seq.)
>W1710802237
LJXT01000078
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
18671
18743
+
Glu
TTC
[ENA]
¡û
>W131223091
AUBU01000003
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
82598
82524
-
Glu
TTC
[ENA]
¡û
>W131223092
AUBU01000003
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
82492
82420
-
Glu
TTC
[ENA]
¡û
>W131223194
AUBX01000009
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
435784
435858
+
Glu
TTC
[ENA]
¡û
>W131223195
AUBX01000009
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
435944
436018
+
Glu
TTC
[ENA]
¡û
>W1711707956
MSSX01000005
Bacteroidota
Algoriphagus faecimaris [MSSX]
97130
97058
-
Glu
TTC
[ENA]
¡û
>W1711707957
MSSX01000005
Bacteroidota
Algoriphagus faecimaris [MSSX]
96990
96918
-
Glu
TTC
[ENA]
¡û
>w023303
AAXU01000001
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
547007
547081
+
Glu
TTC
[ENA]
¡û
>w023302
AAXU01000001
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
546878
546954
+
Glu
TTC
[ENA]
¡û
>W141039124
ALWO02000023
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
330050
330124
+
Glu
TTC
[ENA]
¡û
>W141043733
AMGM01000096
Bacteroidota
Cecembia lonarensis LW9 [AMGM]
11503
11575
+
Glu
TTC
[ENA]
¡û
>WENV181233904
OFET01000262
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
32425
32497
+
Glu
TTC
[ENA]
¢þ
>WENV181233905
OFET01000262
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
32532
32604
+
Glu
TTC
[ENA]
¢þ
>W141278898
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
1130039
1130113
+
Glu
TTC
[ENA]
¡û
>W141278899
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
1130146
1130218
+
Glu
TTC
[ENA]
¡û
>WENV170193842
CEPI01047917
[CEPI] marine metagenome genome assembly TARA_041_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
164
90
-
Glu
TTC
[ENA]
¢þ
>WENV170408556
CEUI01037346
[CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
143
217
+
Glu
TTC
[ENA]
¢þ
>WENV170436442
CEUT01054766
[CEUT] marine metagenome genome assembly TARA_125_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
146
72
-
Glu
TTC
[ENA]
¢þ
>WENV170832023
MDSZ01054845
[MDSZ] marine metagenome; seawater
4
78
+
Glu
TTC
[ENA]
¢þ
>WENV170832024
MDSZ01054845
[MDSZ] marine metagenome; seawater
172
246
+
Glu
TTC
[ENA]
¢þ
>C181187351
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
5576769
5576843
+
Glu
TTC
-
¡û
>C181187352
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
5576870
5576942
+
Glu
TTC
-
¡û
>C191175199
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
4525102
4525028
-
Glu
TTC
-
¡û
>C191175200
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
4525001
4524929
-
Glu
TTC
-
¡û
>C191189174
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
4421594
4421520
-
Glu
TTC
-
¡û
>C191189175
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
4421494
4421422
-
Glu
TTC
-
¡û
>W1910932875
NIUC01000001
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
408352
408280
-
Glu
TTC
[ENA]
¡û
>W1910932876
NIUC01000001
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
408246
408174
-
Glu
TTC
[ENA]
¡û
>W1810531977
QCXY01000004
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
139535
139607
+
Glu
TTC
[ENA]
¡û
>W1810531978
QCXY01000004
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
139638
139710
+
Glu
TTC
[ENA]
¡û
>W121064828
AJMQ01000075
Bacteroidota
Marinilabilia nitratireducens AK2 [AJMQ]
7122
7050
-
Glu
TTC
[ENA]
¡û
>W121071532
AJYA01000020
Bacteroidota
Nitritalea halalkaliphila LW7 [AJYA]
3284
3358
+
Glu
TTC
[ENA]
¡û
>C131003306
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
4392340
4392266
-
Glu
TTC
[Ensembl]
¡û
>C131003307
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
4392240
4392168
-
Glu
TTC
[Ensembl]
¡û
>W1610666094
LJXT01000078
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
18671
18743
+
Glu
TTC
[ENA]
¡û
>W1710513383
FNAC01000006
Bacteroidota
Algoriphagus faecimaris [FNAC]
50451
50523
+
Glu
TTC
[ENA]
¡û
>W1710513384
FNAC01000006
Bacteroidota
Algoriphagus faecimaris [FNAC]
50591
50663
+
Glu
TTC
[ENA]
¡û
>W1710520393
FNFO01000009
Bacteroidota
Catalinimonas alkaloidigena [FNFO]
211068
211142
+
Glu
TTC
[ENA]
¡û
>W1710542606
FNZH01000001
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
1134119
1134191
+
Glu
TTC
[ENA]
¡û
>W1710542607
FNZH01000001
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
1134221
1134295
+
Glu
TTC
[ENA]
¡û
>W1710562652
FOPC01000003
Bacteroidota
Algoriphagus hitonicola [FOPC]
159898
159970
+
Glu
TTC
[ENA]
¡û
>W1710571392
FOVW01000006
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
4064
3990
-
Glu
TTC
[ENA]
¡û
>W1710571393
FOVW01000006
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
3896
3822
-
Glu
TTC
[ENA]
¡û
>W1710593061
FRCY01000003
Bacteroidota
Cyclobacterium lianum [FRCY]
189804
189876
+
Glu
TTC
[ENA]
¡û
>W1710593718
FRXN01000001
Bacteroidota
Algoriphagus zhangzhouensis [FRXN]
704101
704027
-
Glu
TTC
[ENA]
¡û
>W1710593719
FRXN01000001
Bacteroidota
Algoriphagus zhangzhouensis [FRXN]
703943
703869
-
Glu
TTC
[ENA]
¡û
>W1710594210
FSRC01000001
Bacteroidota
Algoriphagus halophilus [FSRC]
1761101
1761027
-
Glu
TTC
[ENA]
¡û
>W1710594211
FSRC01000001
Bacteroidota
Algoriphagus halophilus [FSRC]
1760975
1760901
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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