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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.684448 (22 seq.)
>W131158398
AQUA01000004
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
87561
87635
+
Thr
TGT
[ENA]
¡û
>W131183110
ARRO01000012
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
10926
11000
+
Thr
TGT
[ENA]
¡û
>WENV180357633
OBNN01050510
[OBNN] marine metagenome; Coastal water
280
354
+
Thr
TGT
[ENA]
¢þ
>WENV181380348
OFRD01064138
[OFRD] wastewater metagenome; Exp Tend CN 100WW
117
43
-
Thr
TGT
[ENA]
¢þ
>WENV181401194
OFSF01077724
[OFSF] wastewater metagenome; Exp Tend VB 100WW
238
312
+
Thr
TGT
[ENA]
¢þ
>WENV181836441
OGVJ01007304
[OGVJ] freshwater metagenome; freshwater
1139
1065
-
Thr
TGT
[ENA]
¢þ
>WENV181851394
OGWE01030649
[OGWE] freshwater metagenome; freshwater
232
158
-
Thr
TGT
[ENA]
¢þ
>WENV170601990
FUWD010207268
[FUWD] metagenome; unknown
266
192
-
Thr
TGT
[ENA]
¢þ
>WENV170602778
FUWD010263302
[FUWD] metagenome; unknown
127
53
-
Thr
TGT
[ENA]
¢þ
>C181018678
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
121523
121451
-
Thr
TGT
-
¡û
>C181020869
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
87442
87516
+
Thr
TGT
-
¡û
>C181020943
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
83735
83809
+
Thr
TGT
-
¡û
>C181020981
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
88886
88960
+
Thr
TGT
-
¡û
>C181021017
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
74318
74392
+
Thr
TGT
-
¡û
>C181021053
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
83493
83567
+
Thr
TGT
-
¡û
>C181021126
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
90506
90580
+
Thr
TGT
-
¡û
>C181021165
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
83153
83227
+
Thr
TGT
-
¡û
>C181021277
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
79634
79708
+
Thr
TGT
-
¡û
>WENV031495
AACY021372493
Marine microbial communities from Global Ocean Sampling (GOS)
339
265
-
Thr
TGT
[ENA]
>WENV057760
AACY023305688
Marine microbial communities from Global Ocean Sampling (GOS)
1363
1289
-
Thr
TGT
[ENA]
>WENV057836
AACY023308148
Marine microbial communities from Global Ocean Sampling (GOS)
909
835
-
Thr
TGT
[ENA]
>WENV058136
AACY023318748
Marine microbial communities from Global Ocean Sampling (GOS)
544
470
-
Thr
TGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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