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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.684450 (64 seq.)
>W131158412
AQUA01000008
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
75368
75442
+
Val
GAC
[ENA]
¡û
>W131158415
AQUA01000008
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
82044
82118
+
Val
GAC
[ENA]
¡û
>WENV180110536
OAPN01000399
[OAPN] marine metagenome; 2011
2027
2099
+
Val
GAC
[ENA]
¢þ
>WENV180113774
OAPR01021685
[OAPR] marine metagenome; seawater
394
466
+
Val
GAC
[ENA]
¢þ
>WENV181368410
OFQL01003425
[OFQL] freshwater metagenome; Freshwater Lake
664
736
+
Val
GAC
[ENA]
¢þ
>WENV181369715
OFQP01026775
[OFQP] freshwater metagenome; Freshwater Lake
401
473
+
Val
GAC
[ENA]
¢þ
>WENV181369777
OFQR01000046
[OFQR] freshwater metagenome; Freshwater Lake
16223
16295
+
Val
GAC
[ENA]
¢þ
>WENV181370291
OFQS01002412
[OFQS] freshwater metagenome; Freshwater Lake
1572
1500
-
Val
GAC
[ENA]
¢þ
>WENV181370419
OFQS01010174
[OFQS] freshwater metagenome; Freshwater Lake
776
704
-
Val
GAC
[ENA]
¢þ
>WENV181370659
OFQT01002273
[OFQT] freshwater metagenome; Freshwater Lake
338
266
-
Val
GAC
[ENA]
¢þ
>WENV181384263
OFRH01047653
[OFRH] wastewater metagenome; Exp Tend NO 100WW
185
113
-
Val
GAC
[ENA]
¢þ
>WENV181835762
OGVI01017181
[OGVI] freshwater metagenome; freshwater
327
399
+
Val
GAC
[ENA]
¢þ
>WENV181836298
OGVJ01003827
[OGVJ] freshwater metagenome; freshwater
826
754
-
Val
GAC
[ENA]
¢þ
>WENV181836587
OGVJ01013146
[OGVJ] freshwater metagenome; freshwater
110
182
+
Val
GAC
[ENA]
¢þ
>WENV181842685
OGVT01011119
[OGVT] freshwater metagenome; freshwater
448
376
-
Val
GAC
[ENA]
¢þ
>WENV181843258
OGVU01005305
[OGVU] freshwater metagenome; freshwater
460
532
+
Val
GAC
[ENA]
¢þ
>WENV181845732
OGVX01008220
[OGVX] freshwater metagenome; freshwater
503
431
-
Val
GAC
[ENA]
¢þ
>WENV181846123
OGVX01020914
[OGVX] freshwater metagenome; freshwater
159
87
-
Val
GAC
[ENA]
¢þ
>WENV181849508
OGWA01010286
[OGWA] freshwater metagenome; freshwater
282
354
+
Val
GAC
[ENA]
¢þ
>WENV181851165
OGWE01011399
[OGWE] freshwater metagenome; freshwater
324
252
-
Val
GAC
[ENA]
¢þ
>WENV181853436
OGWI01005649
[OGWI] freshwater metagenome; freshwater
219
291
+
Val
GAC
[ENA]
¢þ
>WENV181853559
OGWI01015077
[OGWI] freshwater metagenome; freshwater
511
583
+
Val
GAC
[ENA]
¢þ
>WENV181855737
OGWM01001122
[OGWM] freshwater metagenome; freshwater
1303
1231
-
Val
GAC
[ENA]
¢þ
>WENV181855817
OGWM01002323
[OGWM] freshwater metagenome; freshwater
2438
2366
-
Val
GAC
[ENA]
¢þ
>WENV181856100
OGWM01019301
[OGWM] freshwater metagenome; freshwater
455
383
-
Val
GAC
[ENA]
¢þ
>WENV181857068
OGWN01047304
[OGWN] freshwater metagenome; freshwater
300
372
+
Val
GAC
[ENA]
¢þ
>WENV001823
AACY020051829
Marine microbial communities from Global Ocean Sampling (GOS)
1914
1988
+
Val
GAC
[ENA]
>WENV001960
AACY020055187
Marine microbial communities from Global Ocean Sampling (GOS)
1838
1764
-
Val
GAC
[ENA]
>WENV170570448
FLOH01000004
[FLOH] marine metagenome; water
1628
1556
-
Val
GAC
[ENA]
¢þ
>WENV170572618
FLOH01001029
[FLOH] marine metagenome; water
1249
1175
-
Val
GAC
[ENA]
¢þ
>WENV170601549
FUWD010179068
[FUWD] metagenome; unknown
426
354
-
Val
GAC
[ENA]
¢þ
>WENV170602037
FUWD010211193
[FUWD] metagenome; unknown
147
73
-
Val
GAC
[ENA]
¢þ
>WENV170602854
FUWD010270708
[FUWD] metagenome; unknown
226
300
+
Val
GAC
[ENA]
¢þ
>WENV170618334
FUWD012963054
[FUWD] metagenome; unknown
76
4
-
Val
GAC
[ENA]
¢þ
>WENV170618943
FUWD012993010
[FUWD] metagenome; unknown
83
157
+
Val
GAC
[ENA]
¢þ
>WENV170625830
FUWD013206723
[FUWD] metagenome; unknown
966
1040
+
Val
GAC
[ENA]
¢þ
>WENV170634050
FUWD013408469
[FUWD] metagenome; unknown
966
1040
+
Val
GAC
[ENA]
¢þ
>WENV170645481
JNSK01000003
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2572
2646
+
Val
GAC
[ENA]
¢þ
>WENV170645495
JNSK01000015
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
56055
55983
-
Val
GAC
[ENA]
¢þ
>WENV170645501
JNSK01000020
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
47841
47915
+
Val
GAC
[ENA]
¢þ
>WENV170645515
JNSK01000041
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
24808
24736
-
Val
GAC
[ENA]
¢þ
>WENV170645572
JNSK01000190
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8
80
+
Val
GAC
[ENA]
¢þ
>C181018668
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
811045
810973
-
Val
GAC
-
¡û
>C181018702
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
933755
933683
-
Val
GAC
-
¡û
>C181020847
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
795532
795604
+
Val
GAC
-
¡û
>C181020884
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
746270
746342
+
Val
GAC
-
¡û
>C181020958
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
752160
752232
+
Val
GAC
-
¡û
>C181020994
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
742240
742312
+
Val
GAC
-
¡û
>C181021030
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
713501
713573
+
Val
GAC
-
¡û
>C181021068
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
707544
707616
+
Val
GAC
-
¡û
>C181021142
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
732090
732162
+
Val
GAC
-
¡û
>C181021178
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
711907
711979
+
Val
GAC
-
¡û
>C181021256
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
756170
756242
+
Val
GAC
-
¡û
>C181021292
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
690504
690576
+
Val
GAC
-
¡û
>C181021342
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
574659
574587
-
Val
GAC
-
¡û
>C181021369
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
767593
767665
+
Val
GAC
-
¡û
>WENV025940
AACY020926952
Marine microbial communities from Global Ocean Sampling (GOS)
319
245
-
Val
GAC
[ENA]
>WENV033882
AACY021562526
Marine microbial communities from Global Ocean Sampling (GOS)
210
284
+
Val
GAC
[ENA]
>WENV057263
AACY023289577
Marine microbial communities from Global Ocean Sampling (GOS)
1101
1175
+
Val
GAC
[ENA]
>WENV057937
AACY023312036
Marine microbial communities from Global Ocean Sampling (GOS)
571
497
-
Val
GAC
[ENA]
>WENV058269
AACY023323107
Marine microbial communities from Global Ocean Sampling (GOS)
853
927
+
Val
GAC
[ENA]
>WENV058282
AACY023323333
Marine microbial communities from Global Ocean Sampling (GOS)
419
493
+
Val
GAC
[ENA]
>WENV058883
AACY023345948
Marine microbial communities from Global Ocean Sampling (GOS)
652
578
-
Val
GAC
[ENA]
>WENV061248
AACY023427817
Marine microbial communities from Global Ocean Sampling (GOS)
167
241
+
Val
GAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK