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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.684451 (34 seq.)
>W131183105
ARRO01000002
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
94719
94645
-
Arg
CCG
[ENA]
¡û
>WENV016788
AACY020469946
Marine microbial communities from Global Ocean Sampling (GOS)
745
819
+
Arg
CCG
[ENA]
>WENV180110762
OAPN01005975
[OAPN] marine metagenome; 2011
46
118
+
Arg
CCG
[ENA]
¢þ
>WENV180357456
OBNN01011627
[OBNN] marine metagenome; Coastal water
386
314
-
Arg
CCG
[ENA]
¢þ
>WENV180377247
OBON01005428
[OBON] marine metagenome; sea water
1203
1131
-
Arg
CCG
[ENA]
¢þ
>WENV181368327
OFQL01000758
[OFQL] freshwater metagenome; Freshwater Lake
1536
1464
-
Arg
CCG
[ENA]
¢þ
>WENV181368913
OFQN01003467
[OFQN] freshwater metagenome; Freshwater Lake
415
487
+
Arg
CCG
[ENA]
¢þ
>WENV181369631
OFQP01013971
[OFQP] freshwater metagenome; Freshwater Lake
531
603
+
Arg
CCG
[ENA]
¢þ
>WENV181369851
OFQR01000730
[OFQR] freshwater metagenome; Freshwater Lake
338
266
-
Arg
CCG
[ENA]
¢þ
>WENV181370227
OFQS01000927
[OFQS] freshwater metagenome; Freshwater Lake
700
628
-
Arg
CCG
[ENA]
¢þ
>WENV181370260
OFQS01001294
[OFQS] freshwater metagenome; Freshwater Lake
1975
1903
-
Arg
CCG
[ENA]
¢þ
>WENV181395758
OFSB01001756
[OFSB] freshwater metagenome; Freshwater Lake
1496
1568
+
Arg
CCG
[ENA]
¢þ
>WENV181395866
OFSB01012678
[OFSB] freshwater metagenome; Freshwater Lake
42
114
+
Arg
CCG
[ENA]
¢þ
>WENV181400586
OFSF01011765
[OFSF] wastewater metagenome; Exp Tend VB 100WW
981
909
-
Arg
CCG
[ENA]
¢þ
>WENV181843795
OGVU01065489
[OGVU] freshwater metagenome; freshwater
209
283
+
Arg
CCG
[ENA]
¢þ
>WENV001921
AACY020054124
Marine microbial communities from Global Ocean Sampling (GOS)
799
873
+
Arg
CCG
[ENA]
>WENV170620462
FUWD013032179
[FUWD] metagenome; unknown
1927
1855
-
Arg
CCG
[ENA]
¢þ
>WENV170628605
FUWD013249649
[FUWD] metagenome; unknown
1927
1855
-
Arg
CCG
[ENA]
¢þ
>WENV170645564
JNSK01000158
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
11723
11651
-
Arg
CCG
[ENA]
¢þ
>C181018673
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
576249
576177
-
Arg
CCG
-
¡û
>C181020889
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
976687
976759
+
Arg
CCG
-
¡û
>C181020963
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
983591
983663
+
Arg
CCG
-
¡û
>C181020999
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
978769
978841
+
Arg
CCG
-
¡û
>C181021035
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
944937
945009
+
Arg
CCG
-
¡û
>C181021073
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
939994
940066
+
Arg
CCG
-
¡û
>C181021147
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
962955
963027
+
Arg
CCG
-
¡û
>C181021183
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
942124
942196
+
Arg
CCG
-
¡û
>C181021297
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
906203
906275
+
Arg
CCG
-
¡û
>WENV042685
AACY022257809
Marine microbial communities from Global Ocean Sampling (GOS)
694
768
+
Arg
CCG
[ENA]
>WENV057371
AACY023292870
Marine microbial communities from Global Ocean Sampling (GOS)
539
613
+
Arg
CCG
[ENA]
>WENV057776
AACY023306170
Marine microbial communities from Global Ocean Sampling (GOS)
629
703
+
Arg
CCG
[ENA]
>WENV057912
AACY023310841
Marine microbial communities from Global Ocean Sampling (GOS)
467
393
-
Arg
CCG
[ENA]
>W1610625343
LIAM01000008
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
8510
8438
-
Arg
CCG
[ENA]
¡û
>W1710756470
LIAM01000008
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
8510
8438
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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