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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6887 (113 seq.)
>W1710879546
LMRU01000004
Bacillota
Bacillus sp. Leaf406 [LMRU]
1955
1863
-
Ser
TGA
[ENA]
¡û
>W1710879570
LMRU01000005
Bacillota
Bacillus sp. Leaf406 [LMRU]
1407
1499
+
Ser
TGA
[ENA]
¡û
>W1710879613
LMRU01000006
Bacillota
Bacillus sp. Leaf406 [LMRU]
98
6
-
Ser
TGA
[ENA]
¡û
>W1710879637
LMRU01000012
Bacillota
Bacillus sp. Leaf406 [LMRU]
11259
11167
-
Ser
TGA
[ENA]
¡û
>W1710881236
LMSY01000001
Bacillota
Bacillus sp. Soil531 [LMSY]
1544344
1544252
-
Ser
TGA
[ENA]
¡û
>W1710881251
LMSY01000032
Bacillota
Bacillus sp. Soil531 [LMSY]
78161
78069
-
Ser
TGA
[ENA]
¡û
>W1710925817
LODM01000012
Bacillota
Priestia megaterium [LODM]
2527270
2527178
-
Ser
TGA
[ENA]
¡û
>W1711020434
LQYP01000005
Bacillota
Bacillus amyloliquefaciens [LQYP]
8744
8836
+
Ser
TGA
[ENA]
¡û
>W1711020561
LQYR01000002
Bacillota
Bacillus atrophaeus vallismortis [LQYR]
8127
8035
-
Ser
TGA
[ENA]
¡û
>W1711020596
LQYR01000020
Bacillota
Bacillus atrophaeus vallismortis [LQYR]
1517
1608
+
Ser
TGA
[ENA]
¡û
>W1711047838
LRPG01000035
Bacillota
Priestia megaterium [LRPG]
1329
1421
+
Ser
TGA
[ENA]
¡û
>W1711047844
LRPG01000056
Bacillota
Priestia megaterium [LRPG]
38747
38839
+
Ser
TGA
[ENA]
¡û
>W1711047876
LRPG01000085
Bacillota
Priestia megaterium [LRPG]
7679
7771
+
Ser
TGA
[ENA]
¡û
>W1711047913
LRPG01000106
Bacillota
Priestia megaterium [LRPG]
743
835
+
Ser
TGA
[ENA]
¡û
>W1711047923
LRPG01000115
Bacillota
Priestia megaterium [LRPG]
8906
8998
+
Ser
TGA
[ENA]
¡û
>W1711090229
LTAP01000001
Bacillota
Priestia endophytica endophyticus [LTAP]
493735
493643
-
Ser
TGA
[ENA]
¡û
>W1711090275
LTAP01000026
Bacillota
Priestia endophytica endophyticus [LTAP]
7639
7731
+
Ser
TGA
[ENA]
¡û
>W1711116807
LUCO01000046
Bacillota
Priestia megaterium [LUCO]
7051
6959
-
Ser
TGA
[ENA]
¡û
>W1711116824
LUCO01000068
Bacillota
Priestia megaterium [LUCO]
597
505
-
Ser
TGA
[ENA]
¡û
>W1711267642
LZCF01000041
Bacillota
Bacillus subtilis [LZCF]
7521
7613
+
Ser
TGA
[ENA]
¡û
>W1711339629
MCAN01000003
Bacillota
Priestia aryabhattai [MCAN]
1290830
1290922
+
Ser
TGA
[ENA]
¡û
>W1711589856
MOEO01000022
Bacillota
Bacillus sp. FMQ74 [MOEO]
8177
8085
-
Ser
TGA
[ENA]
¡û
>W1711678413
MRUF01000008
Bacillota
Priestia megaterium [MRUF]
147403
147495
+
Ser
TGA
[ENA]
¡û
>PL171000358
CP001987
Firmicutes
Bacillus megaterium QM B1551 plasmid:pBM400
46660
46568
-
Ser
TGA
[ENA]
¡û
>C171052890
CP016894
Bacillota
Bacillus subtilis HJ0-6 [CP016894]
21871
21963
+
Ser
TGA
-
¡û
>C171053356
CP016913
Bacillota
Bacillus amyloliquefaciens RD7-7 [CP016913]
23177
23269
+
Ser
TGA
-
¡û
>C171085826
CP018874
Bacillota
Priestia megaterium JX285 [CP018874]
21714
21806
+
Ser
TGA
-
¡û
>C171085886
CP018874
Bacillota
Priestia megaterium JX285 [CP018874]
590904
590996
+
Ser
TGA
-
¡û
>C171085913
CP018874
Bacillota
Priestia megaterium JX285 [CP018874]
4696686
4696594
-
Ser
TGA
-
¡û
>C171085927
CP018874
Bacillota
Priestia megaterium JX285 [CP018874]
4318466
4318374
-
Ser
TGA
-
¡û
>W141003783
ADWW01000010
Bacillota
Bacillus methanolicus MGA3 [ADWW]
7615
7707
+
Ser
TGA
[ENA]
¡û
>WENV180101440
OAOU01061475
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
159
67
-
Ser
TGA
[ENA]
¢þ
>W141011682
AHTF01000075
Bacillota
Priestia megaterium NCT-2 [AHTF]
160
68
-
Ser
TGA
[ENA]
¡û
>W141022319
AJTN02000162
Bacillota
Peribacillus psychrosaccharolyticus ATCC 23296 [AJTN]
6040
6132
+
Ser
TGA
[ENA]
¡û
>C191096187
CP032861
Bacillota
Bacillus subtilis subsp. subtilis N1-1 [CP032861]
3703580
3703672
+
Ser
TGA
-
¡û
>W1910645686
LVYK01000010
Bacillota
Priestia endophytica 3631_10C [LVYK]
18384
18476
+
Ser
TGA
[ENA]
¡û
>W1910645698
LVYK01000048
Bacillota
Priestia endophytica 3631_10C [LVYK]
8071
7979
-
Ser
TGA
[ENA]
¡û
>W1910645775
LWAG01000017
Bacillota
Priestia endophytica 3617_2C [LWAG]
1044
952
-
Ser
TGA
[ENA]
¡û
>W1910645796
LWAG01000096
Bacillota
Priestia endophytica 3617_2C [LWAG]
8142
8050
-
Ser
TGA
[ENA]
¡û
>W1910749987
MJGZ01000003
Bacillota
Bacillus sp. CMAA 1363 [MJGZ]
929294
929202
-
Ser
TGA
[ENA]
¡û
>W1910827284
MWSI01000001
Bacillota
Priestia filamentosa DSM 27955 [MWSI]
219
311
+
Ser
TGA
[ENA]
¡û
>W1910827298
MWSI01000001
Bacillota
Priestia filamentosa DSM 27955 [MWSI]
386577
386669
+
Ser
TGA
[ENA]
¡û
>W1910827341
MWSI01000018
Bacillota
Priestia filamentosa DSM 27955 [MWSI]
8242
8150
-
Ser
TGA
[ENA]
¡û
>W1911192667
NQYF01000001
Bacillota
Priestia filamentosa PK5_39 [NQYF]
3542058
3542150
+
Ser
TGA
[ENA]
¡û
>W1911192681
NQYF01000001
Bacillota
Priestia filamentosa PK5_39 [NQYF]
3928850
3928942
+
Ser
TGA
[ENA]
¡û
>W1911192684
NQYF01000001
Bacillota
Priestia filamentosa PK5_39 [NQYF]
3077538
3077446
-
Ser
TGA
[ENA]
¡û
>W1911298010
NTTT01000075
Bacillota
Priestia megaterium AFS018038 [NTTT]
783728
783636
-
Ser
TGA
[ENA]
¡û
>W1911303807
NTWY01000061
Bacillota
Priestia megaterium AFS008968 [NTWY]
36
128
+
Ser
TGA
[ENA]
¡û
>W1911307270
NTYW01000004
Bacillota
Priestia megaterium AFS003013 [NTYW]
528358
528266
-
Ser
TGA
[ENA]
¡û
>W1911308104
NTZG01000058
Bacillota
Priestia megaterium AFS002252 [NTZG]
677302
677210
-
Ser
TGA
[ENA]
¡û
>W1911319712
NUFU01000025
Bacillota
Priestia megaterium AFS057444 [NUFU]
118039
117947
-
Ser
TGA
[ENA]
¡û
>W1911323806
NUIA01000012
Bacillota
Priestia megaterium AFS051715 [NUIA]
1229243
1229151
-
Ser
TGA
[ENA]
¡û
>W1911331150
NUMC01000003
Bacillota
Bacillus sp. AFS040349 [NUMC]
478
386
-
Ser
TGA
[ENA]
¡û
>W1911331212
NUMC01000155
Bacillota
Bacillus sp. AFS040349 [NUMC]
596
688
+
Ser
TGA
[ENA]
¡û
>W1911362798
NVDJ01000026
Bacillota
Priestia megaterium AFS061494 [NVDJ]
1268104
1268196
+
Ser
TGA
[ENA]
¡û
>W1911364392
NVEG01000003
Bacillota
Priestia megaterium AFS059495 [NVEG]
918136
918044
-
Ser
TGA
[ENA]
¡û
>W1911375523
NVKN01000018
Bacillota
Priestia megaterium AFS099045 [NVKN]
309
217
-
Ser
TGA
[ENA]
¡û
>W1911380553
NVNE01000001
Bacillota
Priestia megaterium AFS090509 [NVNE]
1509
1601
+
Ser
TGA
[ENA]
¡û
>C151088529
CP011974
Bacillota
Priestia filamentosa Hbe603 [CP011974]
23228
23320
+
Ser
TGA
[Ensembl]
¡û
>C151088591
CP011974
Bacillota
Priestia filamentosa Hbe603 [CP011974]
4424318
4424226
-
Ser
TGA
[Ensembl]
¡û
>C151088605
CP011974
Bacillota
Priestia filamentosa Hbe603 [CP011974]
4038162
4038070
-
Ser
TGA
[Ensembl]
¡û
>W1530008499
CYHO01000172
Bacillota
Bacillus subtilis [CYHO]
7567
7656
+
Ser
TGA
[ENA]
¡û
>W1550032693
CYHJ01000068
Bacillota
Bacillus subtilis [CYHJ]
7552
7641
+
Ser
TGA
[ENA]
¡û
>W1550032701
CYHN01000046
Bacillota
Bacillus subtilis [CYHN]
7517
7606
+
Ser
TGA
[ENA]
¡û
>W1550032705
CYHQ01000043
Bacillota
Bacillus subtilis [CYHQ]
7552
7641
+
Ser
TGA
[ENA]
¡û
>C10101809
CP001982
Bacillota
Priestia megaterium DSM 319 [CP001982]
3444863
3444771
-
Ser
TGA
[Ensembl]
¡û
>W1511582872
LATI01000002
Bacillota
Priestia endophytica Hbe603 [LATI]
1224319
1224227
-
Ser
TGA
[ENA]
¡û
>W1511582887
LATI01000016
Bacillota
Priestia endophytica Hbe603 [LATI]
7532
7624
+
Ser
TGA
[ENA]
¡û
>W1511642863
LDWH01000007
Bacillota
Rossellomorea marisflavi LK16 [LDWH]
115884
115976
+
Ser
TGA
[ENA]
¡û
>W1511642908
LDWH01000013
Bacillota
Rossellomorea marisflavi LK16 [LDWH]
1392
1484
+
Ser
TGA
[ENA]
¡û
>W1511642918
LDWH01000015
Bacillota
Rossellomorea marisflavi LK16 [LDWH]
9015
9107
+
Ser
TGA
[ENA]
¡û
>W1511643016
LDWJ01000003
Bacillota
Rossellomorea marisflavi LK19 [LDWJ]
1777
1685
-
Ser
TGA
[ENA]
¡û
>W1511643049
LDWJ01000008
Bacillota
Rossellomorea marisflavi LK19 [LDWJ]
11444
11352
-
Ser
TGA
[ENA]
¡û
>W1511643055
LDWJ01000011
Bacillota
Rossellomorea marisflavi LK19 [LDWJ]
311
403
+
Ser
TGA
[ENA]
¡û
>W1511679519
LFEL01000004
Bacillota
Bacillus sp. LL01 [LFEL]
1697
1789
+
Ser
TGA
[ENA]
¡û
>W1511706331
LGUE01000001
Bacillota
Rossellomorea marisflavi JCM 11544 [LGUE]
174
266
+
Ser
TGA
[ENA]
¡û
>W1511706352
LGUE01000002
Bacillota
Rossellomorea marisflavi JCM 11544 [LGUE]
9357
9449
+
Ser
TGA
[ENA]
¡û
>W1511706396
LGUE01000008
Bacillota
Rossellomorea marisflavi JCM 11544 [LGUE]
1213
1121
-
Ser
TGA
[ENA]
¡û
>C161003766
CP006058
Bacillota
Bacillus amyloliquefaciens UMAF6639 [CP006058]
2205818
2205910
+
Ser
TGA
[Ensembl]
¡û
>C161084949
CP015226
Bacillota
Priestia megaterium IHB B 7164 [CP015226]
3380895
3380803
-
Ser
TGA
-
¡û
>C161092548
CP015975
Bacillota
Bacillus subtilis subsp. subtilis delta6 [CP015975]
22292
22384
+
Ser
TGA
-
¡û
>W1610072645
BCVD01000100
Bacillota
Priestia flexa NBRC 15715 [BCVD]
8132
8040
-
Ser
TGA
[ENA]
¡û
>W1610584139
LBMD01000033
Bacillota
Bacillus sp. CHD6a [LBMD]
1141
1049
-
Ser
TGA
[ENA]
¡û
>W1610584150
LBMD01000043
Bacillota
Bacillus sp. CHD6a [LBMD]
8451
8543
+
Ser
TGA
[ENA]
¡û
>W1610741892
LMRU01000004
Bacillota
Bacillus sp. Leaf406 [LMRU]
1955
1863
-
Ser
TGA
[ENA]
¡û
>W1610741916
LMRU01000005
Bacillota
Bacillus sp. Leaf406 [LMRU]
1407
1499
+
Ser
TGA
[ENA]
¡û
>W1610741959
LMRU01000006
Bacillota
Bacillus sp. Leaf406 [LMRU]
98
6
-
Ser
TGA
[ENA]
¡û
>W1610741983
LMRU01000012
Bacillota
Bacillus sp. Leaf406 [LMRU]
11259
11167
-
Ser
TGA
[ENA]
¡û
>W1610743582
LMSY01000001
Bacillota
Bacillus sp. Soil531 [LMSY]
1544344
1544252
-
Ser
TGA
[ENA]
¡û
>W1610743597
LMSY01000032
Bacillota
Bacillus sp. Soil531 [LMSY]
78161
78069
-
Ser
TGA
[ENA]
¡û
>W1610783463
LODM01000012
Bacillota
Priestia megaterium [LODM]
2527270
2527178
-
Ser
TGA
[ENA]
¡û
>W1610868722
LQYP01000005
Bacillota
Bacillus amyloliquefaciens [LQYP]
8744
8836
+
Ser
TGA
[ENA]
¡û
>W1610868849
LQYR01000002
Bacillota
Bacillus atrophaeus vallismortis [LQYR]
8127
8035
-
Ser
TGA
[ENA]
¡û
>W1610868884
LQYR01000020
Bacillota
Bacillus atrophaeus vallismortis [LQYR]
1517
1608
+
Ser
TGA
[ENA]
¡û
>W1610888967
LRPG01000035
Bacillota
Priestia megaterium [LRPG]
1329
1421
+
Ser
TGA
[ENA]
¡û
>W1610888973
LRPG01000056
Bacillota
Priestia megaterium [LRPG]
38747
38839
+
Ser
TGA
[ENA]
¡û
>W1610889005
LRPG01000085
Bacillota
Priestia megaterium [LRPG]
7679
7771
+
Ser
TGA
[ENA]
¡û
>W1610889042
LRPG01000106
Bacillota
Priestia megaterium [LRPG]
743
835
+
Ser
TGA
[ENA]
¡û
>W1610889052
LRPG01000115
Bacillota
Priestia megaterium [LRPG]
8906
8998
+
Ser
TGA
[ENA]
¡û
>W1610924573
LTAP01000001
Bacillota
Priestia endophytica endophyticus [LTAP]
493735
493643
-
Ser
TGA
[ENA]
¡û
>W1610924619
LTAP01000026
Bacillota
Priestia endophytica endophyticus [LTAP]
7639
7731
+
Ser
TGA
[ENA]
¡û
>W1610928166
LUCO01000046
Bacillota
Priestia megaterium [LUCO]
7051
6959
-
Ser
TGA
[ENA]
¡û
>W1610928183
LUCO01000068
Bacillota
Priestia megaterium [LUCO]
597
505
-
Ser
TGA
[ENA]
¡û
>W1611028835
LZCF01000041
Bacillota
Bacillus subtilis [LZCF]
7521
7613
+
Ser
TGA
[ENA]
¡û
>W1710069763
BCVD01000100
Bacillota
Priestia flexa NBRC 15715 [BCVD]
8132
8040
-
Ser
TGA
[ENA]
¡û
>W1710513135
FMZY01000003
Bacillota
Priestia aryabhattai [FMZY]
60978
61070
+
Ser
TGA
[ENA]
¡û
>W1710573950
FOXX01000001
Bacillota
Priestia endophytica DSM 13796 [FOXX]
493615
493523
-
Ser
TGA
[ENA]
¡û
>W1710573993
FOXX01000034
Bacillota
Priestia endophytica DSM 13796 [FOXX]
7869
7961
+
Ser
TGA
[ENA]
¡û
>W1710607830
FXAJ01000001
Bacillota
Priestia filamentosa filamentosus [FXAJ]
219
311
+
Ser
TGA
[ENA]
¡û
>W1710607844
FXAJ01000001
Bacillota
Priestia filamentosa filamentosus [FXAJ]
386577
386669
+
Ser
TGA
[ENA]
¡û
>W1710607887
FXAJ01000018
Bacillota
Priestia filamentosa filamentosus [FXAJ]
8242
8150
-
Ser
TGA
[ENA]
¡û
>W1710703287
LBMD01000033
Bacillota
Bacillus sp. CHD6a [LBMD]
1141
1049
-
Ser
TGA
[ENA]
¡û
>W1710703298
LBMD01000043
Bacillota
Bacillus sp. CHD6a [LBMD]
8451
8543
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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