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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.688837 (29 seq.)
>W131160981
AQXE01000001
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
318376
318450
+
Gly
GCC
[ENA]
¡û
>W131160983
AQXE01000001
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
318555
318629
+
Gly
GCC
[ENA]
¡û
>W131160984
AQXE01000001
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
318710
318784
+
Gly
GCC
[ENA]
¡û
>WENV180042642
LQAF01016499
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
197
123
-
Gly
GCC
[ENA]
¢þ
>WENV180043709
LQAI01009657
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
95
21
-
Gly
GCC
[ENA]
¢þ
>WENV180043981
LQAJ01000166
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
20314
20388
+
Gly
GCC
[ENA]
¢þ
>WENV183706867
PDWI01005781
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15490
15564
+
Gly
GCC
[ENA]
¢þ
>WENV183706869
PDWI01005781
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15649
15723
+
Gly
GCC
[ENA]
¢þ
>WENV183721805
PDWJ01088312
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
99
173
+
Gly
GCC
[ENA]
¢þ
>WENV183746852
PPCM01000024
[PPCM] marine sediment metagenome; marine sediment
28
102
+
Gly
GCC
[ENA]
¢þ
>WENV183746854
PPCM01000024
[PPCM] marine sediment metagenome; marine sediment
184
258
+
Gly
GCC
[ENA]
¢þ
>WENV183746855
PPCM01000024
[PPCM] marine sediment metagenome; marine sediment
301
375
+
Gly
GCC
[ENA]
¢þ
>WENV183747497
PPCM01003486
[PPCM] marine sediment metagenome; marine sediment
4195
4269
+
Gly
GCC
[ENA]
¢þ
>WENV183747499
PPCM01003486
[PPCM] marine sediment metagenome; marine sediment
4351
4425
+
Gly
GCC
[ENA]
¢þ
>WENV170418652
CEUM01058685
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
206
132
-
Gly
GCC
[ENA]
¢þ
>WENV170437542
CEUU01047616
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
208
134
-
Gly
GCC
[ENA]
¢þ
>WENV170697639
LGVF01167775
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
275
201
-
Gly
GCC
[ENA]
¢þ
>WENV170900975
MDTD01162729
[MDTD] marine metagenome; seawater
41293
41219
-
Gly
GCC
[ENA]
¢þ
>WENV170901444
MDTD01170735
[MDTD] marine metagenome; seawater
31264
31338
+
Gly
GCC
[ENA]
¢þ
>WENV170901446
MDTD01170735
[MDTD] marine metagenome; seawater
31423
31497
+
Gly
GCC
[ENA]
¢þ
>C181226967
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
144230
144304
+
Gly
GCC
-
¡û
>C181226969
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
144389
144463
+
Gly
GCC
-
¡û
>C181226970
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
144503
144577
+
Gly
GCC
-
¡û
>W1911738008
QTZO01000004
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
198604
198678
+
Gly
GCC
[ENA]
¡û
>C131017903
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
111111
111185
+
Gly
GCC
[Ensembl]
¡û
>C131017905
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
111270
111344
+
Gly
GCC
[Ensembl]
¡û
>C131017906
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
111387
111461
+
Gly
GCC
[Ensembl]
¡û
>W1710520968
FNGA01000002
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
182468
182394
-
Gly
GCC
[ENA]
¡û
>W1710607159
FWZU01000006
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
112402
112328
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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