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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.69197 (76 seq.)
>W1710944386
LOQS01000017
Actinomycetota
Corynebacterium glutamicum [LOQS]
196768
196854
+
Leu
CAG
[ENA]
¡û
>W1710944501
LOQV01000017
Actinomycetota
Corynebacterium glutamicum [LOQV]
198455
198541
+
Leu
CAG
[ENA]
¡û
>W1710944560
LOQW01000010
Actinomycetota
Corynebacterium glutamicum [LOQW]
214276
214362
+
Leu
CAG
[ENA]
¡û
>W1711095147
LTGO01000003
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
118389
118475
+
Leu
CAG
[ENA]
¡û
>W1711096594
LTHX01000026
Actinomycetota
Corynebacterium sp. HMSC055D05 [LTHX]
68867
68781
-
Leu
CAG
[ENA]
¡û
>W1711102646
LTNW01000092
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
2445
2359
-
Leu
CAG
[ENA]
¡û
>W1711103640
LTOW01000055
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
39411
39497
+
Leu
CAG
[ENA]
¡û
>W1711105911
LTRH01000014
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
1363
1277
-
Leu
CAG
[ENA]
¡û
>W1711106538
LTRY01000011
Actinomycetota
Corynebacterium sp. HMSC034E11 [LTRY]
2824
2738
-
Leu
CAG
[ENA]
¡û
>W1711107186
LTSO01000011
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
79462
79548
+
Leu
CAG
[ENA]
¡û
>W1711114724
LTZO01000004
Actinomycetota
Corynebacterium sp. HMSC11D10 [LTZO]
94702
94788
+
Leu
CAG
[ENA]
¡û
>W1711185936
LWNU01000043
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
42027
41941
-
Leu
CAG
[ENA]
¡û
>W1711186548
LWOH01000057
Actinomycetota
Corynebacterium sp. HMSC05H05 [LWOH]
32396
32482
+
Leu
CAG
[ENA]
¡û
>W1711186911
LWOP01000032
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
37571
37655
+
Leu
CAG
[ENA]
¡û
>W1711186971
LWOR01000049
Actinomycetota
Corynebacterium sp. HMSC29G08 [LWOR]
30733
30817
+
Leu
CAG
[ENA]
¡û
>W1711208422
LXGG01000022
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
12436
12522
+
Leu
CAG
[ENA]
¡û
>W1711482568
MKAX01000937
Actinomycetota
Corynebacterium sp. BCW_4722 concisus [MKAX]
32729
32815
+
Leu
CAG
[ENA]
¡û
>W131156412
AQPS01000031
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
58765
58679
-
Leu
CAG
[ENA]
¡û
>W131156413
AQPS01000031
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
18565
18479
-
Leu
CAG
[ENA]
¡û
>W131169273
AREP01000027
Actinomycetota
Corynebacterium pilosum DSM 20521 [AREP]
8932
8846
-
Leu
CAG
[ENA]
¡û
>W131215695
ATVF01000006
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
177858
177944
+
Leu
CAG
[ENA]
¡û
>W131251628
CAVS020000004
Actinomycetota
Corynebacterium ihumii GD7 [CAVS]
113862
113948
+
Leu
CAG
[ENA]
¡û
>C005660
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
49705
49791
+
Leu
CAG
[Ensembl]
¡û
>C005780
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
69124
69210
+
Leu
CAG
[Ensembl]
¡û
>W141026627
AKXP01000035
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
214196
214282
+
Leu
CAG
[ENA]
¡û
>W141243550
CAJP01000012
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
22168
22254
+
Leu
CAG
[ENA]
¡û
>WENV182629145
OJKR01010702
[OJKR] metagenome; surface
446
530
+
Leu
CAG
[ENA]
¢þ
>WENV182636081
OJKZ01000217
[OJKZ] metagenome; surface
7194
7278
+
Leu
CAG
[ENA]
¢þ
>WENV182640367
OJLB01004827
[OJLB] metagenome; surface
1617
1701
+
Leu
CAG
[ENA]
¢þ
>WENV182641766
OJLK01000147
[OJLK] metagenome; surface
2350
2266
-
Leu
CAG
[ENA]
¢þ
>WENV182643354
OJLU01003476
[OJLU] metagenome; surface
1183
1267
+
Leu
CAG
[ENA]
¢þ
>WENV182644330
OJLW01023303
[OJLW] metagenome; surface
848
932
+
Leu
CAG
[ENA]
¢þ
>WENV182645007
OJLY01001420
[OJLY] metagenome; surface
3553
3469
-
Leu
CAG
[ENA]
¢þ
>WENV182671495
OJNM01000058
[OJNM] metagenome; surface
58704
58620
-
Leu
CAG
[ENA]
¢þ
>WENV182671675
OJNM01001116
[OJNM] metagenome; surface
5300
5384
+
Leu
CAG
[ENA]
¢þ
>WENV170718160
LSQX01064345
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2544
2458
-
Leu
CAG
[ENA]
¢þ
>WENV170727171
LSQX01407106
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7069
7155
+
Leu
CAG
[ENA]
¢þ
>C181002201
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
70469
70555
+
Leu
CAG
-
¡û
>C181029610
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
49684
49770
+
Leu
CAG
-
¡û
>C181118475
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
830859
830945
+
Leu
CAG
-
¡û
>C181143811
CP026947
Actinomycetota
Corynebacterium yudongzhengii 2183 [CP026947]
38292
38376
+
Leu
CAG
-
¡û
>C181143863
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
50972
51056
+
Leu
CAG
-
¡û
>W09124064
ACHJ01000144
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
21564
21648
+
Leu
CAG
[ENA]
¡û
>W141800911
JPDH01000158
Actinomycetota
Corynebacterium glutamicum crenatum [JPDH]
2454
2540
+
Leu
CAG
[ENA]
¡û
>W1910001216
APJJ01000001
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
61802
61888
+
Leu
CAG
[ENA]
¡û
>W1910225847
FMSX01000016
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
82596
82680
+
Leu
CAG
[ENA]
¡û
>W1910339903
FTLL01000016
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
124798
124882
+
Leu
CAG
[ENA]
¡û
>C141002585
CP003924
Actinomycetota
Corynebacterium maris DSM 45190 [CP003924]
32330
32416
+
Leu
CAG
[Ensembl]
¡û
>C141004126
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
49684
49770
+
Leu
CAG
[Ensembl]
¡û
>W1910469830
FWYQ01000017
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
102390
102306
-
Leu
CAG
[ENA]
¡û
>W1911551210
OVSI01000007
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
92841
92757
-
Leu
CAG
[ENA]
¡û
>W1810187443
PKHP01000003
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
219377
219293
-
Leu
CAG
[ENA]
¡û
>W1810187506
PKHQ01000005
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
130252
130168
-
Leu
CAG
[ENA]
¡û
>W1810568898
QEEY01000006
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
32021
31937
-
Leu
CAG
[ENA]
¡û
>W1810568964
QEEZ01000018
Actinomycetota
Corynebacterium yudongzhengii 2189 [QEEZ]
14350
14266
-
Leu
CAG
[ENA]
¡û
>C151033040
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
48612
48698
+
Leu
CAG
[Ensembl]
¡û
>C151069876
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
47842
47928
+
Leu
CAG
[Ensembl]
¡û
>W1511351441
JRNG01000016
Actinomycetota
Corynebacterium tuscaniense DNF00037 [JRNG]
8857
8771
-
Leu
CAG
[ENA]
¡û
>W1511524476
JYEG01000017
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
42123
42037
-
Leu
CAG
[ENA]
¡û
>W1511644852
LDYD01000016
Actinomycetota
Corynebacterium pilosum CIP103422 [LDYD]
8887
8801
-
Leu
CAG
[ENA]
¡û
>C161003024
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
70468
70554
+
Leu
CAG
-
¡û
>C161063636
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
55599
55685
+
Leu
CAG
[Ensembl]
¡û
>C161096054
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
70469
70555
+
Leu
CAG
-
¡û
>W121016268
AGQQ01000019
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
94445
94531
+
Leu
CAG
[ENA]
¡û
>W1610069826
BCSU01000015
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
19335
19421
+
Leu
CAG
[ENA]
¡û
>C131012008
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
69088
69174
+
Leu
CAG
[Ensembl]
¡û
>C131012068
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
69088
69174
+
Leu
CAG
[Ensembl]
¡û
>C131013456
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
55070
55156
+
Leu
CAG
[Ensembl]
¡û
>C131019733
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
49705
49791
+
Leu
CAG
[Ensembl]
¡û
>W1610996184
LXGG01000022
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
12436
12522
+
Leu
CAG
[ENA]
¡û
>W1710039837
BAYH01000002
Actinomycetota
Corynebacterium glutamicum [BAYH]
25703
25789
+
Leu
CAG
[ENA]
¡û
>W1710067199
BCSU01000015
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
19335
19421
+
Leu
CAG
[ENA]
¡û
>W1710534320
FNRU01000002
Actinomycetota
Corynebacterium coyleae [FNRU]
1093715
1093801
+
Leu
CAG
[ENA]
¡û
>W1710552158
FOGQ01000008
Actinomycetota
Corynebacterium cystitidis DSM 20524 [FOGQ]
114531
114617
+
Leu
CAG
[ENA]
¡û
>W1710598758
FTOF01000001
Actinomycetota
Corynebacterium appendicis CIP 107643 [FTOF]
239799
239713
-
Leu
CAG
[ENA]
¡û
>W1710608158
FXAR01000002
Actinomycetota
Corynebacterium pollutisoli [FXAR]
209530
209444
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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