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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.696765 (20 seq.)
>W1710821492
LKTL01000024
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
23550
23476
-
Gln
TTG
[ENA]
¡û
>W1710821493
LKTL01000024
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
23450
23376
-
Gln
TTG
[ENA]
¡û
>W1710821496
LKTL01000024
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
23044
22970
-
Gln
TTG
[ENA]
¡û
>W1711273475
LZFV01000029
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
360
286
-
Gln
TTG
[ENA]
¡û
>C171108560
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
1231552
1231626
+
Gln
TTG
-
¡û
>C171108561
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
1231652
1231726
+
Gln
TTG
-
¡û
>WENV170023604
BCQL01000214
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
6401
6475
+
Gln
TTG
[ENA]
¢þ
>WENV170023605
BCQL01000214
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
6501
6575
+
Gln
TTG
[ENA]
¢þ
>C191156022
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4360741
4360667
-
Gln
TTG
-
¡û
>C191156023
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4360638
4360564
-
Gln
TTG
-
¡û
>C191156026
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4360313
4360239
-
Gln
TTG
-
¡û
>W1911710129
QPQU01000010
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
38073
37999
-
Gln
TTG
[ENA]
¡û
>W1911710130
QPQU01000010
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
37973
37899
-
Gln
TTG
[ENA]
¡û
>W1911809453
QYYH01000019
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
51646
51720
+
Gln
TTG
[ENA]
¡û
>W1911809454
QYYH01000019
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
51749
51823
+
Gln
TTG
[ENA]
¡û
>W1911809457
QYYH01000019
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
52074
52148
+
Gln
TTG
[ENA]
¡û
>W1610685454
LKTL01000024
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
23550
23476
-
Gln
TTG
[ENA]
¡û
>W1610685455
LKTL01000024
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
23450
23376
-
Gln
TTG
[ENA]
¡û
>W1610685458
LKTL01000024
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
23044
22970
-
Gln
TTG
[ENA]
¡û
>W1611032824
LZFV01000029
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
360
286
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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