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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7010 (56 seq.)
>W1711049108
LRQI01000014
Bacillota
Staphylococcus lugdunensis [LRQI]
49346
49257
-
Ser
GGA
[ENA]
¡û
>W1711092620
LTEG01000067
Bacillota
Staphylococcus sp. HMSC077E11 [LTEG]
88
177
+
Ser
GGA
[ENA]
¡û
>W1711093465
LTFA01000060
Bacillota
Staphylococcus sp. HMSC065E07 [LTFA]
368
457
+
Ser
GGA
[ENA]
¡û
>W1711097388
LTIQ01000056
Bacillota
Staphylococcus sp. HMSC068D08 [LTIQ]
31421
31332
-
Ser
GGA
[ENA]
¡û
>W1711097454
LTIS01000040
Bacillota
Staphylococcus sp. HMSC077E12 [LTIS]
52597
52508
-
Ser
GGA
[ENA]
¡û
>W1711099292
LTKJ01000003
Bacillota
Staphylococcus sp. HMSC062E10 [LTKJ]
31421
31332
-
Ser
GGA
[ENA]
¡û
>W1711099945
LTKX01000069
Bacillota
Staphylococcus sp. HMSC077C04 [LTKX]
368
457
+
Ser
GGA
[ENA]
¡û
>W1711100594
LTLQ01000075
Bacillota
Staphylococcus sp. HMSC74F12 [LTLQ]
368
457
+
Ser
GGA
[ENA]
¡û
>W1711100684
LTLT01000067
Bacillota
Staphylococcus sp. HMSC74A08 [LTLT]
425
514
+
Ser
GGA
[ENA]
¡û
>W1711100697
LTLU01000022
Bacillota
Staphylococcus sp. HMSC73C01 [LTLU]
368
457
+
Ser
GGA
[ENA]
¡û
>W1711100826
LTLY01000079
Bacillota
Staphylococcus sp. HMSC70A05 [LTLY]
52517
52428
-
Ser
GGA
[ENA]
¡û
>W1711100868
LTLZ01000110
Bacillota
Staphylococcus sp. HMSC69H07 [LTLZ]
381
470
+
Ser
GGA
[ENA]
¡û
>W1711101014
LTME01000077
Bacillota
Staphylococcus sp. HMSC62D11 [LTME]
90
179
+
Ser
GGA
[ENA]
¡û
>W1711101291
LTMN01000086
Bacillota
Staphylococcus sp. HMSC55D02 [LTMN]
38961
38872
-
Ser
GGA
[ENA]
¡û
>W1711103792
LTPA01000058
Bacillota
Staphylococcus sp. HMSC069E09 [LTPA]
425
514
+
Ser
GGA
[ENA]
¡û
>W1711104434
LTPR01000090
Bacillota
Staphylococcus sp. HMSC064A09 [LTPR]
49383
49294
-
Ser
GGA
[ENA]
¡û
>W1711104454
LTPS01000022
Bacillota
Staphylococcus sp. HMSC064A01 [LTPS]
32798
32887
+
Ser
GGA
[ENA]
¡û
>W1711104524
LTPU01000111
Bacillota
Staphylococcus sp. HMSC063F10 [LTPU]
52494
52405
-
Ser
GGA
[ENA]
¡û
>W1711104540
LTPV01000075
Bacillota
Staphylococcus sp. HMSC063E12 [LTPV]
357
268
-
Ser
GGA
[ENA]
¡û
>W1711104572
LTPW01000043
Bacillota
Staphylococcus sp. HMSC063D03 [LTPW]
52529
52440
-
Ser
GGA
[ENA]
¡û
>W1711104650
LTPZ01000064
Bacillota
Staphylococcus sp. HMSC063A07 [LTPZ]
52512
52423
-
Ser
GGA
[ENA]
¡û
>W1711104759
LTQC01000037
Bacillota
Staphylococcus sp. HMSC062E08 [LTQC]
52382
52293
-
Ser
GGA
[ENA]
¡û
>W1711104808
LTQD01000086
Bacillota
Staphylococcus sp. HMSC062D12 [LTQD]
357
268
-
Ser
GGA
[ENA]
¡û
>W1711104851
LTQF01000028
Bacillota
Staphylococcus sp. HMSC062A05 [LTQF]
425
514
+
Ser
GGA
[ENA]
¡û
>W1711105034
LTQK01000012
Bacillota
Staphylococcus sp. HMSC061C10 [LTQK]
52494
52405
-
Ser
GGA
[ENA]
¡û
>W1711105433
LTQT01000028
Bacillota
Staphylococcus sp. HMSC060A04 [LTQT]
52548
52459
-
Ser
GGA
[ENA]
¡û
>W1711105538
LTQW01000009
Bacillota
Staphylococcus sp. HMSC058E03 [LTQW]
32820
32909
+
Ser
GGA
[ENA]
¡û
>W1711105850
LTRF01000020
Bacillota
Staphylococcus sp. HMSC055G07 [LTRF]
425
514
+
Ser
GGA
[ENA]
¡û
>W1711109319
LTUO01000041
Bacillota
Staphylococcus sp. HMSC068G03 [LTUO]
90
179
+
Ser
GGA
[ENA]
¡û
>W1711110706
LTVU01000024
Bacillota
Staphylococcus sp. HMSC073C12 [LTVU]
32950
33039
+
Ser
GGA
[ENA]
¡û
>W1711113309
LTYE01000059
Bacillota
Staphylococcus sp. HMSC059F04 [LTYE]
368
457
+
Ser
GGA
[ENA]
¡û
>W1711188003
LWPZ01000063
Bacillota
Staphylococcus sp. HMSC070D07 [LWPZ]
425
514
+
Ser
GGA
[ENA]
¡û
>W1711188219
LWQG01000062
Bacillota
Staphylococcus sp. HMSC068D05 [LWQG]
31421
31332
-
Ser
GGA
[ENA]
¡û
>C171106262
CP020406
Bacillota
Staphylococcus lugdunensis FDAARGOS_222 [CP020406]
832261
832350
+
Ser
GGA
-
¡û
>W141008632
AGZW01000002
Bacillota
Staphylococcus lugdunensis ACS-027-V-Sch2 [AGZW]
121573
121662
+
Ser
GGA
[ENA]
¡û
>WENV180410238
OBUW01009404
[OBUW] human gut metagenome; faeces
34
123
+
Ser
GGA
[ENA]
¢þ
>WENV180415706
OBVF01000179
[OBVF] human gut metagenome; faeces
123
34
-
Ser
GGA
[ENA]
¢þ
>WENV180440052
OBWU01004319
[OBWU] human gut metagenome; faeces
619
530
-
Ser
GGA
[ENA]
¢þ
>WENV180468693
OBYL01000543
[OBYL] human gut metagenome; faeces
111
200
+
Ser
GGA
[ENA]
¢þ
>WENV182806522
OJVP01001239
[OJVP] human gut metagenome; human gut
110
199
+
Ser
GGA
[ENA]
¢þ
>W141308166
JBHB01000021
Bacillota
Staphylococcus lugdunensis UCIM6116 [JBHB]
49358
49269
-
Ser
GGA
[ENA]
¡û
>C181023222
CP017069
Bacillota
Staphylococcus lugdunensis K93G [CP017069]
1152403
1152492
+
Ser
GGA
-
¡û
>C181084196
CP023539
Bacillota
Staphylococcus lugdunensis FDAARGOS_377 [CP023539]
578229
578318
+
Ser
GGA
-
¡û
>C181092572
CP023970
Bacillota
Staphylococcus lugdunensis FDAARGOS_381 [CP023970]
15278
15367
+
Ser
GGA
-
¡û
>C181205433
LS483312
Bacillota
Staphylococcus lugdunensis NCTC7990 [LS483312]
1137649
1137738
+
Ser
GGA
-
¡û
>C181216470
LS483482
Bacillota
Staphylococcus lugdunensis NCTC12217 [LS483482]
1148316
1148405
+
Ser
GGA
-
¡û
>W141565511
JIBR01000056
Bacillota
Staphylococcus lugdunensis VCU148 [JIBR]
34846
34935
+
Ser
GGA
[ENA]
¡û
>W141565557
JIBS01000017
Bacillota
Staphylococcus lugdunensis VCU150 [JIBS]
121994
121905
-
Ser
GGA
[ENA]
¡û
>W1911615890
PPPV01000012
Bacillota
Staphylococcus lugdunensis NCTC 12217 [PPPV]
74247
74336
+
Ser
GGA
[ENA]
¡û
>C10111932
CP001837
Bacillota
Staphylococcus lugdunensis HKU09-01 [CP001837]
1170941
1171030
+
Ser
GGA
[Ensembl]
¡û
>C11120748
FR870271
Bacillota
Staphylococcus lugdunensis N920143 [FR870271]
1200334
1200423
+
Ser
GGA
[Ensembl]
¡û
>W11143612
AEQA01000001
Bacillota
Staphylococcus lugdunensis M23590 [AEQA]
34824
34913
+
Ser
GGA
[ENA]
¡û
>C161064669
CP014022
Bacillota
Staphylococcus lugdunensis FDAARGOS_141 [CP014022]
8116
8205
+
Ser
GGA
-
¡û
>C161064777
CP014023
Bacillota
Staphylococcus lugdunensis FDAARGOS_143 [CP014023]
820311
820222
-
Ser
GGA
-
¡û
>W121035568
AHLK01000041
Bacillota
Staphylococcus lugdunensis VCU139 [AHLK]
34848
34937
+
Ser
GGA
[ENA]
¡û
>W1610890237
LRQI01000014
Bacillota
Staphylococcus lugdunensis [LRQI]
49346
49257
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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