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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7018 (128 seq.)
>W1710798180
LJTH01000004
Gammaproteobacteria
Vibrio alginolyticus [LJTH]
295369
295277
-
Ser
GCT
[ENA]
¡û
>W1710826933
LLEI02000026
Gammaproteobacteria
Vibrio bivalvicida [LLEI]
15990
15898
-
Ser
GCT
[ENA]
¡û
>W1711003663
LQHM01000081
Gammaproteobacteria
Vibrio cholerae O1 biovar El Tor [LQHM]
155
63
-
Ser
GCT
[ENA]
¡û
>W1711116661
LUCN01000010
Gammaproteobacteria
Vibrio cholerae O1 biovar El Tor [LUCN]
174481
174573
+
Ser
GCT
[ENA]
¡û
>W131230247
AUHL01000005
Gammaproteobacteria
Pseudidiomarina sediminum DSM 21906 [AUHL]
269839
269747
-
Ser
GCT
[ENA]
¡û
>W1711335136
MBQR01000182
Gammaproteobacteria
Vibrio cholerae O1 [MBQR]
46830
46738
-
Ser
GCT
[ENA]
¡û
>W1711436954
MIPC01000125
Gammaproteobacteria
Vibrio cholerae [MIPC]
50349
50440
+
Ser
GCT
[ENA]
¡û
>W1711693104
MSGH01000010
Gammaproteobacteria
Vibrio cholerae [MSGH]
132654
132562
-
Ser
GCT
[ENA]
¡û
>W1711695560
MSIW01000008
Gammaproteobacteria
Vibrio cholerae [MSIW]
131206
131114
-
Ser
GCT
[ENA]
¡û
>W1711741152
MUEM01000002
Gammaproteobacteria
Salinivibrio kushneri IB560 [MUEM]
203819
203911
+
Ser
GCT
[ENA]
¡û
>W1711741154
MUEM01000002
Gammaproteobacteria
Salinivibrio kushneri IB560 [MUEM]
204020
204112
+
Ser
GCT
[ENA]
¡û
>W1711741733
MUET01000010
Gammaproteobacteria
Salinivibrio sp. IB282 [MUET]
53610
53702
+
Ser
GCT
[ENA]
¡û
>W1711741735
MUET01000010
Gammaproteobacteria
Salinivibrio sp. IB282 [MUET]
53811
53903
+
Ser
GCT
[ENA]
¡û
>W1711742067
MUEX01000004
Gammaproteobacteria
Salinivibrio sp. IB870 [MUEX]
114859
114767
-
Ser
GCT
[ENA]
¡û
>W1711742069
MUEX01000004
Gammaproteobacteria
Salinivibrio sp. IB870 [MUEX]
114657
114565
-
Ser
GCT
[ENA]
¡û
>W1711786175
MWGB01000091
Gammaproteobacteria
Vibrio cholerae [MWGB]
131221
131129
-
Ser
GCT
[ENA]
¡û
>W1711786404
MWGF01000023
Gammaproteobacteria
Vibrio cholerae [MWGF]
132298
132206
-
Ser
GCT
[ENA]
¡û
>W1711788911
MWHI01000045
Gammaproteobacteria
Vibrio cholerae [MWHI]
131217
131125
-
Ser
GCT
[ENA]
¡û
>W1711789614
MWHR01000023
Gammaproteobacteria
Vibrio cholerae [MWHR]
132579
132487
-
Ser
GCT
[ENA]
¡û
>W1711790284
MWHZ01000017
Gammaproteobacteria
Vibrio cholerae [MWHZ]
132579
132487
-
Ser
GCT
[ENA]
¡û
>W1712000400
NDXR01000028
Gammaproteobacteria
Vibrio cholerae [NDXR]
154
62
-
Ser
GCT
[ENA]
¡û
>W1712001729
NEDU01000026
Gammaproteobacteria
Vibrio cholerae [NEDU]
50605
50697
+
Ser
GCT
[ENA]
¡û
>C171022284
CP013301
Gammaproteobacteria
Vibrio cholerae C5 [CP013301, CP013302]
591403
591495
+
Ser
GCT
-
¡û
>W131034459
AJRQ01000215
Gammaproteobacteria
Vibrio cholerae HC-50A2 [AJRQ]
11511
11603
+
Ser
GCT
[ENA]
¡û
>W131034990
AJRX01000052
Gammaproteobacteria
Vibrio cholerae HE-40 [AJRX]
51599
51691
+
Ser
GCT
[ENA]
¡û
>W131106982
APFK01000113
Gammaproteobacteria
Vibrio cholerae O1 str. 116063 [APFK]
37435
37527
+
Ser
GCT
[ENA]
¡û
>W131107301
APFO01000028
Gammaproteobacteria
Vibrio cholerae O1 str. AG-8040 [APFO]
174150
174242
+
Ser
GCT
[ENA]
¡û
>W131107866
APFV01000086
Gammaproteobacteria
Vibrio cholerae O1 str. EM-1536 [APFV]
47164
47256
+
Ser
GCT
[ENA]
¡û
>W131223236
AUBY01000002
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
109710
109618
-
Ser
GCT
[ENA]
¡û
>W131223241
AUBY01000003
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
368512
368604
+
Ser
GCT
[ENA]
¡û
>W131223346
AUBZ01000031
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
59347
59255
-
Ser
GCT
[ENA]
¡û
>W131223352
AUBZ01000037
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
33453
33361
-
Ser
GCT
[ENA]
¡û
>W131045900
AMRX01000006
Gammaproteobacteria
Gayadomonas joobiniege G7 [AMRX]
57270
57362
+
Ser
GCT
[ENA]
¡û
>W131244267
CAPN01000046
Gammaproteobacteria
Pseudoalteromonas luteoviolacea B = ATCC 29581 [CAPN]
23082
22990
-
Ser
GCT
[ENA]
¡û
>w019113
AATY01000045
Gammaproteobacteria
Vibrio cholerae AM-19226 [AATY]
21915
21821
-
Ser
GCT
[ENA]
¡û
>w009905
AAKI02000119
Gammaproteobacteria
Vibrio cholerae V51 [AAKI]
6724
6630
-
Ser
GCT
[ENA]
¡û
>w009688
AAKF02000067
Gammaproteobacteria
Vibrio cholerae MO10 [AAKF]
14644
14550
-
Ser
GCT
[ENA]
¡û
>WENV180118041
OARX01000031
[OARX] human gut metagenome; ENVO:feces
47138
47230
+
Ser
GCT
[ENA]
¢þ
>WENV180400010
OBRE01001149
[OBRE] human gut metagenome; ENVO:feces
339
247
-
Ser
GCT
[ENA]
¢þ
>W141041296
AMBT01000028
Gammaproteobacteria
Vibrio cholerae VC4370 [AMBT]
381
289
-
Ser
GCT
[ENA]
¡û
>W141189423
AYNL01000012
Gammaproteobacteria
Vibrio cholerae O1 biovar El Tor str. Ogawa RND6878 [AYNL]
130868
130776
-
Ser
GCT
[ENA]
¡û
>W141238972
BBMR01000004
Gammaproteobacteria
Vibrio maritimus [BBMR]
41866
41958
+
Ser
GCT
[ENA]
¡û
>W141238974
BBMR01000004
Gammaproteobacteria
Vibrio maritimus [BBMR]
42108
42200
+
Ser
GCT
[ENA]
¡û
>WENV170015928
AZIJ01004478
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
357
265
-
Ser
GCT
[ENA]
¢þ
>WENV170655099
JTFN01005064
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1661
1753
+
Ser
GCT
[ENA]
¢þ
>WENV170656257
JTFO01007359
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1168
1076
-
Ser
GCT
[ENA]
¢þ
>C181220900
LT897797
Gammaproteobacteria
Vibrio cholerae [LT897797, LT897798]
2459240
2459148
-
Ser
GCT
-
¡û
>W09103660
AAKG01000001
Gammaproteobacteria
Vibrio cholerae O395 [AAKG]
71979
72071
+
Ser
GCT
[ENA]
¡û
>W09124513
ACHV01000001
Gammaproteobacteria
Vibrio cholerae bv. albensis VL426 [ACHV]
2004348
2004440
+
Ser
GCT
[ENA]
¡û
>W09124776
ACHY01000011
Gammaproteobacteria
Vibrio cholerae TMA 21 [ACHY]
26086
26178
+
Ser
GCT
[ENA]
¡û
>W141568808
JIDK01000004
Gammaproteobacteria
Vibrio cholerae [JIDK]
38
130
+
Ser
GCT
[ENA]
¡û
>W141777018
JOMR01000001
Gammaproteobacteria
Thiomicrospira pelophila DSM 1534 [JOMR]
816061
816153
+
Ser
GCT
[ENA]
¡û
>W1910378591
FULF01000145
Gammaproteobacteria
Vibrio gazogenes type strain: CECT 5068 [FULF]
361
269
-
Ser
GCT
[ENA]
¡û
>W1910378593
FULF01000145
Gammaproteobacteria
Vibrio gazogenes type strain: CECT 5068 [FULF]
147
55
-
Ser
GCT
[ENA]
¡û
>W1910585388
JYJM01000117
Gammaproteobacteria
Vibrio marisflavi CAIM 1886 [JYJM]
52804
52712
-
Ser
GCT
[ENA]
¡û
>W1910585389
JYJM01000117
Gammaproteobacteria
Vibrio marisflavi CAIM 1886 [JYJM]
52593
52501
-
Ser
GCT
[ENA]
¡û
>W1910695895
MDYK01000007
Gammaproteobacteria
Vibrio cholerae 11116 [MDYK]
147568
147660
+
Ser
GCT
[ENA]
¡û
>C09110828
CP001233
Gammaproteobacteria
Vibrio cholerae M66-2 [CP001233, CP001234]
538640
538732
+
Ser
GCT
[Ensembl]
¡û
>W1911116220
NOJM01000629
Gammaproteobacteria
Vibrio cholerae 2779947 [NOJM]
2140
2048
-
Ser
GCT
[ENA]
¡û
>W1911116522
NOJS01000118
Gammaproteobacteria
Vibrio cholerae 456300 [NOJS]
4814
4906
+
Ser
GCT
[ENA]
¡û
>W1911204650
NRIR01000001
Gammaproteobacteria
Paraferrimonas sedimenticola NBRC 101628 [NRIR]
300153
300061
-
Ser
GCT
[ENA]
¡û
>W1911204654
NRIR01000001
Gammaproteobacteria
Paraferrimonas sedimenticola NBRC 101628 [NRIR]
297792
297700
-
Ser
GCT
[ENA]
¡û
>W1911218962
NRRB01000001
Gammaproteobacteria
Paraferrimonas haliotis AFRC7-2-1 [NRRB]
827112
827204
+
Ser
GCT
[ENA]
¡û
>W1911219052
NRRC01000005
Gammaproteobacteria
Paraferrimonas haliotis CFD7-4-2 [NRRC]
357
449
+
Ser
GCT
[ENA]
¡û
>W1911219065
NRRC01000011
Gammaproteobacteria
Paraferrimonas haliotis CFD7-4-2 [NRRC]
63071
63163
+
Ser
GCT
[ENA]
¡û
>W1911585110
PIPQ01000003
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
108369
108277
-
Ser
GCT
[ENA]
¡û
>W1911585125
PIPR01000001
Gammaproteobacteria
Pseudidiomarina aestuarii KYW314 [PIPR]
102537
102629
+
Ser
GCT
[ENA]
¡û
>W1911585245
PIPT01000003
Gammaproteobacteria
Pseudidiomarina aquimaris SW15 [PIPT]
103676
103768
+
Ser
GCT
[ENA]
¡û
>W1911585313
PIPU01000005
Gammaproteobacteria
Pseudidiomarina donghaiensis 908033 [PIPU]
109539
109631
+
Ser
GCT
[ENA]
¡û
>W1911585386
PIPW01000001
Gammaproteobacteria
Pseudidiomarina halophila BH195 [PIPW]
1165412
1165320
-
Ser
GCT
[ENA]
¡û
>W1911585520
PIPZ01000001
Gammaproteobacteria
Pseudidiomarina marina PIM1 [PIPZ]
103209
103301
+
Ser
GCT
[ENA]
¡û
>W1911585626
PIQB01000001
Gammaproteobacteria
Pseudidiomarina planktonica TS-T11 [PIQB]
118485
118577
+
Ser
GCT
[ENA]
¡û
>W1911585807
PIQE01000002
Gammaproteobacteria
Pseudidiomarina sediminum c121 [PIQE]
110389
110481
+
Ser
GCT
[ENA]
¡û
>W1911585987
PIQJ01000001
Gammaproteobacteria
Pseudidiomarina tainanensis PIN1 [PIQJ]
1659712
1659620
-
Ser
GCT
[ENA]
¡û
>W1810004179
BFAQ01000028
Gammaproteobacteria
Vibrio penaeicida TUMSAT-NU1 [BFAQ]
150356
150264
-
Ser
GCT
[ENA]
¡û
>W1810004181
BFAQ01000028
Gammaproteobacteria
Vibrio penaeicida TUMSAT-NU1 [BFAQ]
150104
150012
-
Ser
GCT
[ENA]
¡û
>W1810395358
PYCF01000010
Gammaproteobacteria
Vibrio cholerae 8 [PYCF]
147459
147551
+
Ser
GCT
[ENA]
¡û
>W1810406626
PYMH01000008
Gammaproteobacteria
Photobacterium lutimaris JCM 13586 [PYMH]
1357
1265
-
Ser
GCT
[ENA]
¡û
>W1810425725
PYVG01000016
Gammaproteobacteria
Pseudidiomarina aestuarii A9-4 [PYVG]
5233
5325
+
Ser
GCT
[ENA]
¡û
>W1810425813
PYVN01000004
Gammaproteobacteria
Pseudidiomarina aestuarii Z-D3-2 [PYVN]
13880
13972
+
Ser
GCT
[ENA]
¡û
>W1810425908
PYVR01000003
Gammaproteobacteria
Pseudidiomarina aestuarii Z-E7-4 [PYVR]
18256
18164
-
Ser
GCT
[ENA]
¡û
>W1810568354
QEEI01000089
Gammaproteobacteria
Vibrio cholerae BD17 [QEEI]
50635
50727
+
Ser
GCT
[ENA]
¡û
>W1810609107
QGTT01000010
Gammaproteobacteria
Pseudidiomarina maritima 125B1 [QGTT]
38463
38555
+
Ser
GCT
[ENA]
¡û
>W1810698179
QLYY01000026
Gammaproteobacteria
Vibrio tetraodonis A511 [QLYY]
62356
62448
+
Ser
GCT
[ENA]
¡û
>W1810701346
QMED01000006
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
29631
29539
-
Ser
GCT
[ENA]
¡û
>W1810721862
QNSG01000012
Gammaproteobacteria
Pseudidiomarina tainanensis 125Bg [QNSG]
38463
38555
+
Ser
GCT
[ENA]
¡û
>W1810758916
QPJA01000011
Gammaproteobacteria
Pseudidiomarina tainanensis 86_o [QPJA]
38464
38556
+
Ser
GCT
[ENA]
¡û
>W1510147235
CGHE01000163
Gammaproteobacteria
Vibrio cholerae [CGHE]
137699
137791
+
Ser
GCT
[ENA]
¡û
>W1510669914
CWNP01000004
Gammaproteobacteria
Vibrio cholerae A383 [CWNP]
266257
266165
-
Ser
GCT
[ENA]
¡û
>W1510669916
CWNP01000004
Gammaproteobacteria
Vibrio cholerae A383 [CWNP]
265999
265907
-
Ser
GCT
[ENA]
¡û
>W1510670287
CWNV01000005
Gammaproteobacteria
Vibrio cholerae A68 [CWNV]
50597
50689
+
Ser
GCT
[ENA]
¡û
>W1510670290
CWNV01000005
Gammaproteobacteria
Vibrio cholerae A68 [CWNV]
50978
51070
+
Ser
GCT
[ENA]
¡û
>W1510671094
CWOJ01000006
Gammaproteobacteria
Vibrio cholerae V109 [CWOJ]
131369
131277
-
Ser
GCT
[ENA]
¡û
>W1510673037
CWPZ01000004
Gammaproteobacteria
Vibrio cholerae A482 [CWPZ]
95888
95980
+
Ser
GCT
[ENA]
¡û
>W1510674877
CWRL01000016
Gammaproteobacteria
Vibrio cholerae 4593 [CWRL]
31174
31082
-
Ser
GCT
[ENA]
¡û
>W1510674924
CWRM01000007
Gammaproteobacteria
Vibrio cholerae 4623 [CWRM]
48768
48860
+
Ser
GCT
[ENA]
¡û
>W1510675861
CWRZ01000008
Gammaproteobacteria
Vibrio cholerae 4519 [CWRZ]
37505
37597
+
Ser
GCT
[ENA]
¡û
>W1510676881
CWSN01000010
Gammaproteobacteria
Vibrio cholerae [CWSN]
131179
131087
-
Ser
GCT
[ENA]
¡û
>W1510741086
CYHB01000002
Gammaproteobacteria
Pseudidiomarina woesei DSM 27808 [CYHB]
109839
109931
+
Ser
GCT
[ENA]
¡û
>W1511357881
JRWQ01000020
Gammaproteobacteria
Vibrio tubiashii T33 [JRWQ]
575
483
-
Ser
GCT
[ENA]
¡û
>W1511357883
JRWQ01000020
Gammaproteobacteria
Vibrio tubiashii T33 [JRWQ]
303
211
-
Ser
GCT
[ENA]
¡û
>W1511385031
JSSZ01000001
Gammaproteobacteria
Vibrio cholerae 2010AA-148 [JSSZ]
37754
37846
+
Ser
GCT
[ENA]
¡û
>W1511529373
JYJP01000037
Gammaproteobacteria
Vibrio mexicanus CAIM 1540 [JYJP]
11169
11261
+
Ser
GCT
[ENA]
¡û
>W1511529375
JYJP01000037
Gammaproteobacteria
Vibrio mexicanus CAIM 1540 [JYJP]
11444
11536
+
Ser
GCT
[ENA]
¡û
>W1511570220
LAKN01000026
Gammaproteobacteria
Vibrio cholerae O1 biovar El Tor P18899-D [LAKN]
153
61
-
Ser
GCT
[ENA]
¡û
>W1511586711
LAZL01000009
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
6053
5961
-
Ser
GCT
[ENA]
¡û
>W1511702564
LGNM01000078
Gammaproteobacteria
Vibrio cholerae O1 EM-1690 [LGNM]
47174
47266
+
Ser
GCT
[ENA]
¡û
>W1511704120
LGOG01000049
Gammaproteobacteria
Vibrio cholerae O1 NHCM-06 [LGOG]
47156
47248
+
Ser
GCT
[ENA]
¡û
>W1511705203
LGOT01000071
Gammaproteobacteria
Vibrio cholerae O1 NHCM-053 [LGOT]
89574
89482
-
Ser
GCT
[ENA]
¡û
>C161049675
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1303716
1303624
-
Ser
GCT
-
¡û
>C161049680
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1303124
1303032
-
Ser
GCT
-
¡û
>W121030918
AHGH01000011
Gammaproteobacteria
Vibrio cholerae O1 str. 2011EL-1089 [AHGH]
101777
101685
-
Ser
GCT
[ENA]
¡û
>W1610071554
BCUD01000010
Gammaproteobacteria
Vibrio nereis NBRC 15637 [BCUD]
138345
138437
+
Ser
GCT
[ENA]
¡û
>W1610071556
BCUD01000010
Gammaproteobacteria
Vibrio nereis NBRC 15637 [BCUD]
138624
138716
+
Ser
GCT
[ENA]
¡û
>W1610582565
LBFZ01000006
Gammaproteobacteria
Vibrio cholerae [LBFZ]
169490
169582
+
Ser
GCT
[ENA]
¡û
>W1610632479
LIPW01000002
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
109839
109931
+
Ser
GCT
[ENA]
¡û
>W1610928020
LUCN01000010
Gammaproteobacteria
Vibrio cholerae O1 biovar El Tor [LUCN]
174481
174573
+
Ser
GCT
[ENA]
¡û
>W1710068787
BCUD01000010
Gammaproteobacteria
Vibrio nereis NBRC 15637 [BCUD]
138345
138437
+
Ser
GCT
[ENA]
¡û
>W1710068789
BCUD01000010
Gammaproteobacteria
Vibrio nereis NBRC 15637 [BCUD]
138624
138716
+
Ser
GCT
[ENA]
¡û
>W1710509856
FMXN01000002
Gammaproteobacteria
Pseudidiomarina indica [FMXN]
247803
247711
-
Ser
GCT
[ENA]
¡û
>W1710539320
FNVG01000022
Gammaproteobacteria
Vibrio hangzhouensis [FNVG]
95
3
-
Ser
GCT
[ENA]
¡û
>W1710574987
FOYU01000001
Gammaproteobacteria
Pseudidiomarina maritima [FOYU]
103309
103401
+
Ser
GCT
[ENA]
¡û
>W1710579276
FPCF01000004
Gammaproteobacteria
Pseudidiomarina donghaiensis [FPCF]
109735
109827
+
Ser
GCT
[ENA]
¡û
>W1710701713
LBFZ01000006
Gammaproteobacteria
Vibrio cholerae [LBFZ]
169490
169582
+
Ser
GCT
[ENA]
¡û
>W1710701770
LBGA01000010
Gammaproteobacteria
Vibrio cholerae [LBGA]
147386
147478
+
Ser
GCT
[ENA]
¡û
>W1710702196
LBGG01000004
Gammaproteobacteria
Vibrio cholerae [LBGG]
147382
147474
+
Ser
GCT
[ENA]
¡û
>W1710702247
LBGH01000002
Gammaproteobacteria
Vibrio cholerae [LBGH]
146785
146877
+
Ser
GCT
[ENA]
¡û
>W1710766865
LIPW01000002
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
109839
109931
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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