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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.702424 (22 seq.)
>W1710926315
LOEE01000028
Bacillota
Thermotalea metallivorans [LOEE]
232792
232866
+
Glu
TTC
[ENA]
¡û
>W1710926322
LOEE01000041
Bacillota
Thermotalea metallivorans [LOEE]
58661
58587
-
Glu
TTC
[ENA]
¡û
>W1710926336
LOEE01000061
Bacillota
Thermotalea metallivorans [LOEE]
49989
49915
-
Glu
TTC
[ENA]
¡û
>W1710926355
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
502
576
+
Glu
TTC
[ENA]
¡û
>W1710926372
LOEE01000098
Bacillota
Thermotalea metallivorans [LOEE]
1354
1280
-
Glu
TTC
[ENA]
¡û
>C171059789
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3235691
3235765
+
Glu
TTC
-
¡û
>C171059814
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3955443
3955517
+
Glu
TTC
-
¡û
>C171059829
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3962110
3962184
+
Glu
TTC
-
¡û
>C171059844
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
2743957
2743883
-
Glu
TTC
-
¡û
>C171059858
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
2290824
2290750
-
Glu
TTC
-
¡û
>C171059878
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
762039
761965
-
Glu
TTC
-
¡û
>C171059893
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
620246
620172
-
Glu
TTC
-
¡û
>WENV183745955
POVV01002411
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
3435
3509
+
Glu
TTC
[ENA]
¢þ
>WENV183746081
POVV01007349
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
884
958
+
Glu
TTC
[ENA]
¢þ
>WENV183746207
POVV01014460
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
120
46
-
Glu
TTC
[ENA]
¢þ
>WENV170019649
BBPD01029070
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
493
567
+
Glu
TTC
[ENA]
¢þ
>W1610783808
LOEE01000028
Bacillota
Thermotalea metallivorans [LOEE]
232792
232866
+
Glu
TTC
[ENA]
¡û
>W1610783815
LOEE01000041
Bacillota
Thermotalea metallivorans [LOEE]
58661
58587
-
Glu
TTC
[ENA]
¡û
>W1610783829
LOEE01000061
Bacillota
Thermotalea metallivorans [LOEE]
49989
49915
-
Glu
TTC
[ENA]
¡û
>W1610783848
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
502
576
+
Glu
TTC
[ENA]
¡û
>W1610783865
LOEE01000098
Bacillota
Thermotalea metallivorans [LOEE]
1354
1280
-
Glu
TTC
[ENA]
¡û
>W1710589077
FQZV01000058
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
22592
22518
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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