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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.70604 (55 seq.)
>W1711117583
LUDG01000006
Bacteroidota
Riemerella anatipestifer [LUDG]
47208
47121
-
Ser
TGA
[ENA]
¡û
>W1711117845
LUDN01000007
Bacteroidota
Riemerella anatipestifer [LUDN]
70441
70528
+
Ser
TGA
[ENA]
¡û
>W1711117971
LUDR01000007
Bacteroidota
Riemerella anatipestifer [LUDR]
104214
104301
+
Ser
TGA
[ENA]
¡û
>C171015058
CP011859
Bacteroidota
Riemerella anatipestifer HXb2 [CP011859]
2320358
2320271
-
Ser
TGA
-
¡û
>W131164165
ARAI01000023
Bacteroidota
Capnocytophaga cynodegmi DSM 19736 [ARAI]
17024
16937
-
Ser
TGA
[ENA]
¡û
>WENV180591561
OCOV01046619
[OCOV] marine metagenome; ENVO:01000301
315
402
+
Ser
TGA
[ENA]
¢þ
>WENV180708359
ODFJ01001149
[ODFJ] human metagenome; G_DNA_Tongue dorsum
9100
9015
-
Ser
TGA
[ENA]
¢þ
>WENV180759409
ODHY01010108
[ODHY] human metagenome; G_DNA_Buccal mucosa
678
593
-
Ser
TGA
[ENA]
¢þ
>WENV180767448
ODIG01000055
[ODIG] human metagenome; G_DNA_Tongue dorsum
77938
78023
+
Ser
TGA
[ENA]
¢þ
>WENV180769105
ODIG01034052
[ODIG] human metagenome; G_DNA_Tongue dorsum
1004
919
-
Ser
TGA
[ENA]
¢þ
>WENV180781445
ODIP01000062
[ODIP] human metagenome; G_DNA_Supragingival plaque
126
41
-
Ser
TGA
[ENA]
¢þ
>WENV180782258
ODIP01047663
[ODIP] human metagenome; G_DNA_Supragingival plaque
158
243
+
Ser
TGA
[ENA]
¢þ
>WENV180807783
ODJI01010772
[ODJI] human metagenome; G_DNA_Tongue dorsum
591
676
+
Ser
TGA
[ENA]
¢þ
>WENV180832001
ODKC01000334
[ODKC] human metagenome; G_DNA_Supragingival plaque
34386
34301
-
Ser
TGA
[ENA]
¢þ
>WENV180832866
ODKC01006427
[ODKC] human metagenome; G_DNA_Supragingival plaque
2829
2744
-
Ser
TGA
[ENA]
¢þ
>WENV180835927
ODKE01021669
[ODKE] human metagenome; G_DNA_Supragingival plaque
831
916
+
Ser
TGA
[ENA]
¢þ
>WENV180844031
ODKN01025767
[ODKN] human metagenome; G_DNA_Supragingival plaque
1087
1002
-
Ser
TGA
[ENA]
¢þ
>WENV180861914
ODLE01018053
[ODLE] human metagenome; G_DNA_Tongue dorsum
281
196
-
Ser
TGA
[ENA]
¢þ
>WENV180877971
ODLV01007235
[ODLV] human metagenome; G_DNA_Tongue dorsum
2710
2795
+
Ser
TGA
[ENA]
¢þ
>WENV180888507
ODMN01001333
[ODMN] human metagenome; G_DNA_Supragingival plaque
9148
9233
+
Ser
TGA
[ENA]
¢þ
>WENV180889795
ODMN01154390
[ODMN] human metagenome; G_DNA_Supragingival plaque
194
109
-
Ser
TGA
[ENA]
¢þ
>WENV180933182
ODTQ01034479
[ODTQ] human metagenome; G_DNA_Buccal mucosa
102
17
-
Ser
TGA
[ENA]
¢þ
>WENV180960572
ODUM01066387
[ODUM] human metagenome; G_DNA_Tongue dorsum
285
200
-
Ser
TGA
[ENA]
¢þ
>WENV180977383
ODUZ01000529
[ODUZ] human metagenome; G_DNA_Tongue dorsum
222
137
-
Ser
TGA
[ENA]
¢þ
>WENV180979568
ODVC01000327
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
35901
35986
+
Ser
TGA
[ENA]
¢þ
>WENV180981005
ODVE01005036
[ODVE] human metagenome; G_DNA_Supragingival plaque
1588
1673
+
Ser
TGA
[ENA]
¢þ
>WENV181001695
ODVW01004760
[ODVW] human metagenome; G_DNA_Buccal mucosa
126
211
+
Ser
TGA
[ENA]
¢þ
>WENV181007704
ODWE01000486
[ODWE] human metagenome; G_DNA_Supragingival plaque
1070
985
-
Ser
TGA
[ENA]
¢þ
>WENV181008113
ODWE01002027
[ODWE] human metagenome; G_DNA_Supragingival plaque
3163
3248
+
Ser
TGA
[ENA]
¢þ
>WENV181008231
ODWE01003140
[ODWE] human metagenome; G_DNA_Supragingival plaque
272
187
-
Ser
TGA
[ENA]
¢þ
>WENV181009451
ODWE01073527
[ODWE] human metagenome; G_DNA_Supragingival plaque
416
331
-
Ser
TGA
[ENA]
¢þ
>WENV181017449
ODWR01079933
[ODWR] human metagenome; G_DNA_Tongue dorsum
200
115
-
Ser
TGA
[ENA]
¢þ
>WENV181041701
ODXS01031162
[ODXS] human metagenome; G_DNA_Tongue dorsum
621
706
+
Ser
TGA
[ENA]
¢þ
>WENV181043643
ODXV01000274
[ODXV] human metagenome; G_DNA_Tongue dorsum
19940
20025
+
Ser
TGA
[ENA]
¢þ
>WENV181049368
ODYD01000079
[ODYD] human metagenome; G_DNA_Supragingival plaque
43447
43532
+
Ser
TGA
[ENA]
¢þ
>WENV181050827
ODYD01068525
[ODYD] human metagenome; G_DNA_Supragingival plaque
498
413
-
Ser
TGA
[ENA]
¢þ
>WENV181077118
OEAP01026401
[OEAP] human metagenome; G_DNA_Supragingival plaque
1466
1381
-
Ser
TGA
[ENA]
¢þ
>WENV181077264
OEAP01036396
[OEAP] human metagenome; G_DNA_Supragingival plaque
119
34
-
Ser
TGA
[ENA]
¢þ
>WENV181086841
OEAY01004237
[OEAY] human metagenome; G_DNA_Tongue dorsum
3927
4012
+
Ser
TGA
[ENA]
¢þ
>WENV181097948
OECA01048088
[OECA] human metagenome; G_DNA_Tongue dorsum
441
356
-
Ser
TGA
[ENA]
¢þ
>WENV181108509
OEEJ01000036
[OEEJ] human metagenome; G_DNA_Tongue dorsum
107913
107998
+
Ser
TGA
[ENA]
¢þ
>WENV181136021
OEGI01000258
[OEGI] human metagenome; G_DNA_Supragingival plaque
25138
25223
+
Ser
TGA
[ENA]
¢þ
>WENV181150461
OEHW01002806
[OEHW] human metagenome; G_DNA_Tongue dorsum
9103
9188
+
Ser
TGA
[ENA]
¢þ
>WENV181159968
OEIK01001016
[OEIK] human metagenome; G_DNA_Supragingival plaque
1292
1207
-
Ser
TGA
[ENA]
¢þ
>WENV181843227
OGVU01003987
[OGVU] freshwater metagenome; freshwater
143
228
+
Ser
TGA
[ENA]
¢þ
>WENV181851302
OGWE01020688
[OGWE] freshwater metagenome; freshwater
335
420
+
Ser
TGA
[ENA]
¢þ
>WENV181857435
OGWO01005120
[OGWO] freshwater metagenome; freshwater
664
579
-
Ser
TGA
[ENA]
¢þ
>C181063575
CP022380
Bacteroidota
Capnocytophaga sp. H4358 [CP022380]
2623407
2623492
+
Ser
TGA
-
¡û
>C191212293
LR134489
Bacteroidota
Capnocytophaga sputigena NCTC11097 [LR134489]
367225
367140
-
Ser
TGA
-
¡û
>W1510076257
CDOG01000004
Bacteroidota
Capnocytophaga cynodegmi Ccy74 [CDOG]
20983
21070
+
Ser
TGA
[ENA]
¡û
>C11118451
CP002346
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP002346]
2091058
2091145
+
Ser
TGA
[Ensembl]
¡û
>C161034903
CP011390
Bacteroidota
Flavisolibacter tropicus LCS9 [CP011390]
804146
804061
-
Ser
TGA
[Ensembl]
¡û
>W1610928942
LUDG01000006
Bacteroidota
Riemerella anatipestifer [LUDG]
47208
47121
-
Ser
TGA
[ENA]
¡û
>W1610929204
LUDN01000007
Bacteroidota
Riemerella anatipestifer [LUDN]
70441
70528
+
Ser
TGA
[ENA]
¡û
>W1610929330
LUDR01000007
Bacteroidota
Riemerella anatipestifer [LUDR]
104214
104301
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK