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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.723622 (4 seq.)
>WENV181404275
OGBZ01009684
[OGBZ] sediment metagenome; hot spring sediment
521
595
+
Asn
GTT
[ENA]
¢þ
>C10113397
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1987258
1987184
-
Asn
GTT
[Ensembl]
¡û
>W1710515316
FNBS01000033
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
327
401
+
Asn
GTT
[ENA]
¡û
>W1710560387
FONI01000052
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
325
399
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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