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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.72493 (51 seq.)
>W1710932212
LOIC01000020
Gammaproteobacteria
Photorhabdus namnaonensis luminescens [LOIC]
31472
31558
+
Leu
TAA
[ENA]
¡û
>W1711178351
LWGQ01000080
Gammaproteobacteria
Photorhabdus luminescens [LWGQ]
4298
4384
+
Leu
TAA
[ENA]
¡û
>W1711327289
MBJU01000070
Gammaproteobacteria
Photorhabdus temperata [MBJU]
39853
39939
+
Leu
TAA
[ENA]
¡û
>W1712109024
NJFA01000001
Gammaproteobacteria
Proteus mirabilis [NJFA]
3361173
3361259
+
Leu
TAA
[ENA]
¡û
>W1712109025
NJFA01000001
Gammaproteobacteria
Proteus mirabilis [NJFA]
3361393
3361479
+
Leu
TAA
[ENA]
¡û
>W1712109026
NJFA01000001
Gammaproteobacteria
Proteus mirabilis [NJFA]
3361646
3361732
+
Leu
TAA
[ENA]
¡û
>C171039467
CP015581
Gammaproteobacteria
Tatumella citrea ATCC 39140 [CP015581]
1513825
1513911
+
Leu
TAA
-
¡û
>WENV181228875
OFEI01000028
[OFEI] insect metagenome; insect
26230
26316
+
Leu
TAA
[ENA]
¢þ
>WENV181232010
OFEL01000047
[OFEL] insect metagenome; insect
15777
15691
-
Leu
TAA
[ENA]
¢þ
>W141148096
AWXP01000008
Gammaproteobacteria
Proteus hauseri ZMd44 [AWXP]
671792
671878
+
Leu
TAA
[ENA]
¡û
>W141148097
AWXP01000008
Gammaproteobacteria
Proteus hauseri ZMd44 [AWXP]
672009
672095
+
Leu
TAA
[ENA]
¡û
>W141148098
AWXP01000008
Gammaproteobacteria
Proteus hauseri ZMd44 [AWXP]
672266
672352
+
Leu
TAA
[ENA]
¡û
>WENV182595677
OJIY01000002
[OJIY] metagenome; faeces
1133603
1133517
-
Leu
TAA
[ENA]
¢þ
>WENV182595678
OJIY01000002
[OJIY] metagenome; faeces
1133390
1133304
-
Leu
TAA
[ENA]
¢þ
>WENV182595679
OJIY01000002
[OJIY] metagenome; faeces
1133139
1133053
-
Leu
TAA
[ENA]
¢þ
>C181017195
CP015281
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii DSPV002N [CP015281]
2396069
2395983
-
Leu
TAA
-
¡û
>C181108078
CP024900
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii DJC [CP024900]
2376516
2376430
-
Leu
TAA
-
¡û
>C181108155
CP024901
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii TT01 [CP024901]
2396070
2395984
-
Leu
TAA
-
¡û
>W1910857408
NBVR01000031
Gammaproteobacteria
Proteus alimentorum 08MAS0041 [NBVR]
514359
514273
-
Leu
TAA
[ENA]
¡û
>W1910857409
NBVR01000031
Gammaproteobacteria
Proteus alimentorum 08MAS0041 [NBVR]
514140
514054
-
Leu
TAA
[ENA]
¡û
>W1910857410
NBVR01000031
Gammaproteobacteria
Proteus alimentorum 08MAS0041 [NBVR]
513883
513797
-
Leu
TAA
[ENA]
¡û
>W1910857411
NBVR01000031
Gammaproteobacteria
Proteus alimentorum 08MAS0041 [NBVR]
513626
513540
-
Leu
TAA
[ENA]
¡û
>W1910857412
NBVR01000031
Gammaproteobacteria
Proteus alimentorum 08MAS0041 [NBVR]
513369
513283
-
Leu
TAA
[ENA]
¡û
>W1910932679
NITY01000011
Gammaproteobacteria
Xenorhabdus mauleonii DSM 17908 [NITY]
43491
43405
-
Leu
TAA
[ENA]
¡û
>W1910939786
NJAH01000014
Gammaproteobacteria
Xenorhabdus sp. KK7.4 [NJAH]
110523
110609
+
Leu
TAA
[ENA]
¡û
>W1910941444
NJCX01000035
Gammaproteobacteria
Xenorhabdus kozodoii DSM 17907 [NJCX]
4631
4545
-
Leu
TAA
[ENA]
¡û
>W1911237732
NSCD01000015
Gammaproteobacteria
Photorhabdus sp. S7-51 [NSCD]
7266
7180
-
Leu
TAA
[ENA]
¡û
>W1911237811
NSCE01000016
Gammaproteobacteria
Photorhabdus sp. S14-60 [NSCE]
7266
7180
-
Leu
TAA
[ENA]
¡û
>W1911238069
NSCI01000001
Gammaproteobacteria
Photorhabdus laumondii subsp. clarkei BOJ-47 [NSCI]
173616
173530
-
Leu
TAA
[ENA]
¡û
>W1911238386
NSCM01000024
Gammaproteobacteria
Photorhabdus bodei LJ24-63 [NSCM]
28599
28685
+
Leu
TAA
[ENA]
¡û
>W1911238416
NSCN01000001
Gammaproteobacteria
Photorhabdus sp. HUG-39 [NSCN]
280037
280123
+
Leu
TAA
[ENA]
¡û
>W1911632349
PUJX01000007
Gammaproteobacteria
Photorhabdus luminescens MEX47-22 [PUJX]
202602
202688
+
Leu
TAA
[ENA]
¡û
>W1911632457
PUJY01000081
Gammaproteobacteria
Photorhabdus khanii MEX20-17 [PUJY]
1055
969
-
Leu
TAA
[ENA]
¡û
>W1810081159
PENY01000027
Gammaproteobacteria
Proteus sp. TJ1640 [PENY]
498367
498281
-
Leu
TAA
[ENA]
¡û
>W1810081160
PENY01000027
Gammaproteobacteria
Proteus sp. TJ1640 [PENY]
498156
498070
-
Leu
TAA
[ENA]
¡û
>C151098310
FO704551
Gammaproteobacteria
Xenorhabdus poinarii G6 [FO704551]
1956361
1956275
-
Leu
TAA
[Ensembl]
¡û
>W1510651171
CVRY01000004
Gammaproteobacteria
Proteus penneri CSUR P1867 [CVRY]
377022
376936
-
Leu
TAA
[ENA]
¡û
>W1510651172
CVRY01000004
Gammaproteobacteria
Proteus penneri CSUR P1867 [CVRY]
376810
376724
-
Leu
TAA
[ENA]
¡û
>W1510651173
CVRY01000004
Gammaproteobacteria
Proteus penneri CSUR P1867 [CVRY]
376554
376468
-
Leu
TAA
[ENA]
¡û
>W1511401186
JTHJ02000022
Gammaproteobacteria
Photorhabdus luminescens NBAII HiPL101 [JTHJ]
138
224
+
Leu
TAA
[ENA]
¡û
>W1511401242
JTHK01000164
Gammaproteobacteria
Xenorhabdus sp. NBAII XenSa04 [JTHK]
104
190
+
Leu
TAA
[ENA]
¡û
>W1511512697
JXUR02000121
Gammaproteobacteria
Photorhabdus luminescens NBAII Hb105 [JXUR]
15083
14997
-
Leu
TAA
[ENA]
¡û
>W1610575773
LAGR01000086
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGR]
2607
2521
-
Leu
TAA
[ENA]
¡û
>W1610575774
LAGR01000086
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGR]
2388
2302
-
Leu
TAA
[ENA]
¡û
>W1610789743
LOIC01000020
Gammaproteobacteria
Photorhabdus namnaonensis luminescens [LOIC]
31472
31558
+
Leu
TAA
[ENA]
¡û
>W1610986398
LWGQ01000080
Gammaproteobacteria
Photorhabdus luminescens [LWGQ]
4298
4384
+
Leu
TAA
[ENA]
¡û
>W1710508726
FMWJ01000013
Gammaproteobacteria
Photorhabdus luminescens [FMWJ]
85959
85873
-
Leu
TAA
[ENA]
¡û
>W1710553701
FOHV01000010
Gammaproteobacteria
Thorsellia anophelis DSM 18579 [FOHV]
66814
66900
+
Leu
TAA
[ENA]
¡û
>W1710578201
FPBJ01000047
Gammaproteobacteria
Xenorhabdus koppenhoeferi [FPBJ]
1537
1451
-
Leu
TAA
[ENA]
¡û
>W1710694037
LAGR01000086
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGR]
2607
2521
-
Leu
TAA
[ENA]
¡û
>W1710694038
LAGR01000086
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGR]
2388
2302
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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