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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.72988 (38 seq.)
>W1710934472
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
254312
254224
-
Leu
TAA
[ENA]
¡û
>W1710934494
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
25809
25897
+
Leu
TAA
[ENA]
¡û
>W1711147368
LVJO01000026
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
79492
79404
-
Leu
TAA
[ENA]
¡û
>W1711149071
LVLD01000016
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
56778
56690
-
Leu
TAA
[ENA]
¡û
>W1711149107
LVLE01000014
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
44945
44857
-
Leu
TAA
[ENA]
¡û
>W1711149150
LVLF01000013
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
44805
44717
-
Leu
TAA
[ENA]
¡û
>W1711149182
LVLG01000006
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
38541
38453
-
Leu
TAA
[ENA]
¡û
>W1711272440
LZFI01000006
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
101680
101768
+
Leu
TAA
[ENA]
¡û
>W1711281993
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
1272989
1273077
+
Leu
TAA
[ENA]
¡û
>W1711282026
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
741260
741348
+
Leu
TAA
[ENA]
¡û
>W1711421589
MHZG01000002
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
140701
140789
+
Leu
TAA
[ENA]
¡û
>W1711625784
MPIY01000007
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
116590
116502
-
Leu
TAA
[ENA]
¡û
>W1711932810
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
1054344
1054256
-
Leu
TAA
[ENA]
¡û
>W1712077070
NGUP01000004
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
51434
51346
-
Leu
TAA
[ENA]
¡û
>C171035125
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1302640
1302552
-
Leu
TAA
-
¡û
>C171035163
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1321698
1321610
-
Leu
TAA
-
¡û
>C171035201
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1309671
1309583
-
Leu
TAA
-
¡û
>C017392
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1204438
1204350
-
Leu
TAA
[Ensembl]
¡û
>WENV016783
AACY020469821
Marine microbial communities from Global Ocean Sampling (GOS)
1065
977
-
Leu
TAA
[ENA]
>WENV180377904
OBON01195814
[OBON] marine metagenome; sea water
47
135
+
Leu
TAA
[ENA]
¢þ
>WENV180391159
OBPM01023917
[OBPM] marine metagenome; ENVO:00002010
289
377
+
Leu
TAA
[ENA]
¢þ
>WENV170621312
FUWD013055203
[FUWD] metagenome; unknown
223
135
-
Leu
TAA
[ENA]
¢þ
>WENV170624478
FUWD013182212
[FUWD] metagenome; unknown
5013
5101
+
Leu
TAA
[ENA]
¢þ
>WENV170629489
FUWD013271637
[FUWD] metagenome; unknown
223
135
-
Leu
TAA
[ENA]
¢þ
>WENV170632763
FUWD013387022
[FUWD] metagenome; unknown
5013
5101
+
Leu
TAA
[ENA]
¢þ
>C181187687
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
1080448
1080360
-
Leu
TAA
-
¡û
>C181218975
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
526372
526460
+
Leu
TAA
-
¡û
>C181219014
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
807696
807784
+
Leu
TAA
-
¡û
>C181219062
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1696751
1696663
-
Leu
TAA
-
¡û
>C181219105
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
793752
793664
-
Leu
TAA
-
¡û
>W09106269
AAUC01000001
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
80121
80033
-
Leu
TAA
[ENA]
¡û
>C141003788
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
668163
668251
+
Leu
TAA
[Ensembl]
¡û
>W1810699169
QMCG01000003
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
35572
35484
-
Leu
TAA
[ENA]
¡û
>W1810699186
QMCH01000002
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
235557
235645
+
Leu
TAA
[ENA]
¡û
>C151025642
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
674099
674187
+
Leu
TAA
[Ensembl]
¡û
>C161092390
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1245507
1245419
-
Leu
TAA
[Ensembl]
¡û
>W1610792003
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
254312
254224
-
Leu
TAA
[ENA]
¡û
>W1610792025
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
25809
25897
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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