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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73084 (71 seq.)
>W1710885353
LMXE01000004
Bacillota
Leuconostoc mesenteroides [LMXE]
360363
360446
+
Leu
CAG
[ENA]
¡û
>W1711617435
MPAM01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAM]
12446
12529
+
Leu
CAG
[ENA]
¡û
>W1711617488
MPAN01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
12446
12529
+
Leu
CAG
[ENA]
¡û
>W1711617538
MPAO01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAO]
12293
12376
+
Leu
CAG
[ENA]
¡û
>W1711617588
MPAP01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAP]
12446
12529
+
Leu
CAG
[ENA]
¡û
>W1711617637
MPAQ01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAQ]
12574
12657
+
Leu
CAG
[ENA]
¡û
>W1711617731
MPAS01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAS]
12228
12311
+
Leu
CAG
[ENA]
¡û
>W1711617810
MPAT01000009
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAT]
12292
12375
+
Leu
CAG
[ENA]
¡û
>W1711617831
MPAU01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAU]
12251
12334
+
Leu
CAG
[ENA]
¡û
>W1711622345
MPEA01000036
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEA]
12370
12453
+
Leu
CAG
[ENA]
¡û
>W1711622392
MPEB01000041
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEB]
3932
4015
+
Leu
CAG
[ENA]
¡û
>W1711622466
MPEC01000045
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEC]
3942
3859
-
Leu
CAG
[ENA]
¡û
>W1711622524
MPED01000042
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPED]
12292
12375
+
Leu
CAG
[ENA]
¡û
>W1711622610
MPEF01000008
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEF]
23440
23357
-
Leu
CAG
[ENA]
¡û
>W1711622639
MPEG01000003
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
12292
12375
+
Leu
CAG
[ENA]
¡û
>W1711622684
MPEH01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEH]
12292
12375
+
Leu
CAG
[ENA]
¡û
>W1711622737
MPEI01000003
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEI]
3932
4015
+
Leu
CAG
[ENA]
¡û
>W1711622783
MPEJ01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEJ]
12291
12374
+
Leu
CAG
[ENA]
¡û
>W1711627213
MPLH01000084
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLH]
695
612
-
Leu
CAG
[ENA]
¡û
>W1711627237
MPLI01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPLI]
64151
64068
-
Leu
CAG
[ENA]
¡û
>W1711627323
MPLJ01000020
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLJ]
35562
35645
+
Leu
CAG
[ENA]
¡û
>W1711627529
MPLO01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
136684
136769
+
Leu
CAG
[ENA]
¡û
>W1711627592
MPLP01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLP]
80072
79987
-
Leu
CAG
[ENA]
¡û
>W1711627639
MPLQ01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLQ]
22194
22279
+
Leu
CAG
[ENA]
¡û
>W1711627687
MPLR01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLR]
35474
35557
+
Leu
CAG
[ENA]
¡û
>C171019402
CP013016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides DRC0211 [CP013016]
1378593
1378676
+
Leu
CAG
-
¡û
>C171032519
CP014611
Bacillota
Leuconostoc mesenteroides subsp. jonggajibkimchii DRC1506 [CP014611]
1347166
1347249
+
Leu
CAG
-
¡û
>C171037198
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
1402826
1402911
+
Leu
CAG
-
¡û
>C171038883
CP015442
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD1710 [CP015442]
1545643
1545728
+
Leu
CAG
-
¡û
>C171111830
CP020731
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides FM06 [CP020731]
1390636
1390553
-
Leu
CAG
-
¡û
>C012140
CP000414
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [CP000414]
1461108
1461191
+
Leu
CAG
[Ensembl]
¡û
>W141075599
ATAZ01000024
Bacillota
Leuconostoc mesenteroides subsp. cremoris TIFN8 [ATAZ]
40933
40850
-
Leu
CAG
[ENA]
¡û
>W141292176
JAUJ01000017
Bacillota
Leuconostoc mesenteroides subsp. cremoris T26 [JAUJ]
12208
12291
+
Leu
CAG
[ENA]
¡û
>W141292194
JAUJ01000122
Bacillota
Leuconostoc mesenteroides subsp. cremoris T26 [JAUJ]
64086
64003
-
Leu
CAG
[ENA]
¡û
>WENV183511799
OMJG01004841
[OMJG] food metagenome; Cotija cheese
1648
1565
-
Leu
CAG
[ENA]
¢þ
>C181003764
AP017935
Bacillota
Leuconostoc suionicum LT-38 [AP017935]
1651102
1651187
+
Leu
CAG
-
¡û
>C181003827
AP017936
Bacillota
Leuconostoc mesenteroides LK-151 [AP017936]
1740608
1740691
+
Leu
CAG
-
¡û
>C181054923
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
1410371
1410454
+
Leu
CAG
-
¡û
>C191019058
CP021491
Bacillota
Leuconostoc mesenteroides WiKim33 [CP021491]
1730436
1730353
-
Leu
CAG
-
¡û
>C191135407
CP035139
Bacillota
Leuconostoc mesenteroides SRCM103356 [CP035139]
1354773
1354856
+
Leu
CAG
-
¡û
>C191137962
CP035271
Bacillota
Leuconostoc mesenteroides SRCM103453 [CP035271]
1465158
1465241
+
Leu
CAG
-
¡û
>C191146245
CP035746
Bacillota
Leuconostoc mesenteroides SRCM103460 [CP035746]
1404331
1404414
+
Leu
CAG
-
¡û
>W09100500
AABH02000033
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [AABH]
3445
3362
-
Leu
CAG
[ENA]
¡û
>W09127251
ACKV01000042
Bacillota
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 [ACKV]
12142
12225
+
Leu
CAG
[ENA]
¡û
>W1910181181
BJLS01000007
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
59404
59321
-
Leu
CAG
[ENA]
¡û
>C141000451
CP000574
Bacillota
Leuconostoc mesenteroides KFRI-MG [CP000574]
1307307
1307390
+
Leu
CAG
[Ensembl]
¡û
>W1910810806
MUXD01000002
Bacillota
Leuconostoc mesenteroides YL48 [MUXD]
61112
61029
-
Leu
CAG
[ENA]
¡û
>W1910870945
NCWT01000001
Bacillota
Leuconostoc mesenteroides OG2 [NCWT]
113075
113158
+
Leu
CAG
[ENA]
¡û
>W1911533349
OKQR01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8486 [OKQR]
115024
114939
-
Leu
CAG
[ENA]
¡û
>W1911533500
OKQU01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 9216 [OKQU]
239752
239667
-
Leu
CAG
[ENA]
¡û
>W1911533624
OKQW01000003
Bacillota
Leuconostoc mesenteroides CECT 9268 [OKQW]
36751
36834
+
Leu
CAG
[ENA]
¡û
>W1911533943
OKRL01000001
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
1267815
1267898
+
Leu
CAG
[ENA]
¡û
>W1911538491
OMON01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
114892
114807
-
Leu
CAG
[ENA]
¡û
>W1911539187
OMPP01000003
Bacillota
Leuconostoc mesenteroides CECT 9266 [OMPP]
36243
36326
+
Leu
CAG
[ENA]
¡û
>W1810705422
QMJH01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_608 [QMJH]
46690
46775
+
Leu
CAG
[ENA]
¡û
>W1810705477
QMJI01000007
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_609 [QMJI]
9381
9466
+
Leu
CAG
[ENA]
¡û
>W1810705546
QMJK01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_611 [QMJK]
117776
117691
-
Leu
CAG
[ENA]
¡û
>C151089371
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
192648
192731
+
Leu
CAG
[Ensembl]
¡û
>W1510013863
BBPK01000003
Bacillota
Leuconostoc mesenteroides Wikim17 [BBPK]
11993
12076
+
Leu
CAG
[ENA]
¡û
>WENV11100282
AEKF01000010
Food metagenome, Jonggazip commercial cabbage kimchi
40994
40911
-
Leu
CAG
[ENA]
¡û
>W1511346262
JRGZ01000002
Bacillota
Leuconostoc mesenteroides P45 [JRGZ]
1211777
1211862
+
Leu
CAG
[ENA]
¡û
>W1511585403
LAYN01000010
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
44708
44625
-
Leu
CAG
[ENA]
¡û
>W1511585689
LAYU01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides LbE16 [LAYU]
122209
122294
+
Leu
CAG
[ENA]
¡û
>W1511585779
LAYV01000022
Bacillota
Leuconostoc mesenteroides subsp. cremoris LbT16 [LAYV]
20205
20288
+
Leu
CAG
[ENA]
¡û
>C121005807
CP003101
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides J18 [CP003101]
1351177
1351260
+
Leu
CAG
[Ensembl]
¡û
>C161074405
CP014610
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD3749 [CP014610]
1410668
1410751
+
Leu
CAG
-
¡û
>W1610061385
BCMO01000008
Bacillota
Leuconostoc mesenteroides [BCMO]
44398
44313
-
Leu
CAG
[ENA]
¡û
>W1610061426
BCMP01000015
Bacillota
Leuconostoc mesenteroides [BCMP]
34916
34831
-
Leu
CAG
[ENA]
¡û
>W1610747279
LMXE01000004
Bacillota
Leuconostoc mesenteroides [LMXE]
360363
360446
+
Leu
CAG
[ENA]
¡û
>W1710059050
BCMO01000008
Bacillota
Leuconostoc mesenteroides [BCMO]
44398
44313
-
Leu
CAG
[ENA]
¡û
>W1710059091
BCMP01000015
Bacillota
Leuconostoc mesenteroides [BCMP]
34916
34831
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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