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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73163 (124 seq.)
>W1710886818
LMYG01000034
Gammaproteobacteria
Pantoea ananatis [LMYG]
243298
243384
+
Leu
GAG
[ENA]
¡û
>W1711184166
LWLR01000001
Gammaproteobacteria
Pantoea sp. OXWO6B1 [LWLR]
1117336
1117422
+
Leu
GAG
[ENA]
¡û
>W1711318546
MAYN01000008
Gammaproteobacteria
Pantoea eucrina [MAYN]
2444833
2444747
-
Leu
GAG
[ENA]
¡û
>W1711360490
MDJQ01000037
Gammaproteobacteria
Pantoea sp. Ae16 [MDJQ]
264192
264106
-
Leu
GAG
[ENA]
¡û
>W1711437591
MIPP01000001
Gammaproteobacteria
Pantoea eucrina [MIPP]
72009
72095
+
Leu
GAG
[ENA]
¡û
>W1711512710
MLFE01000002
Gammaproteobacteria
Pantoea allii [MLFE]
250548
250634
+
Leu
GAG
[ENA]
¡û
>W1711513284
MLFP01000004
Gammaproteobacteria
Pantoea rodasii [MLFP]
287243
287329
+
Leu
GAG
[ENA]
¡û
>W1711513381
MLFR01000007
Gammaproteobacteria
Pantoea rwandensis [MLFR]
34816
34730
-
Leu
GAG
[ENA]
¡û
>W1711513443
MLFS01000015
Gammaproteobacteria
Pantoea wallisii [MLFS]
76364
76450
+
Leu
GAG
[ENA]
¡û
>C171063841
CP017581
Gammaproteobacteria
Pantoea stewartii subsp. stewartii DC283 [CP017581]
829674
829760
+
Leu
GAG
-
¡û
>WENV180310557
OBJT01003524
[OBJT] soil metagenome; soil
2799
2885
+
Leu
GAG
[ENA]
¢þ
>W141039474
ALXE01000053
Gammaproteobacteria
Pantoea sp. A4 [ALXE]
71075
71161
+
Leu
GAG
[ENA]
¡û
>W141071571
ASJH01000002
Gammaproteobacteria
Pantoea ananatis BRT175 [ASJH]
435092
435006
-
Leu
GAG
[ENA]
¡û
>W141214591
AZTE01000027
Gammaproteobacteria
Pantoea ananatis Sd-1 [AZTE]
59955
60041
+
Leu
GAG
[ENA]
¡û
>W141223450
BADG01000675
Gammaproteobacteria
Pantoea sp. B40 [BADG]
1526
1440
-
Leu
GAG
[ENA]
¡û
>W141230723
BATH01000046
Gammaproteobacteria
Pantoea ananatis DAR 76143 [BATH]
92449
92363
-
Leu
GAG
[ENA]
¡û
>WENV170000344
AEWW01015594
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
8717
8803
+
Leu
GAG
[ENA]
¢þ
>W141485849
JFZU01000023
Gammaproteobacteria
Pantoea ananatis LMG 2665 [JFZU]
249644
249730
+
Leu
GAG
[ENA]
¡û
>C181064737
CP022427
Gammaproteobacteria
Pantoea ananatis YJ76 [CP022427]
3549634
3549548
-
Leu
GAG
-
¡û
>C191134108
CP035034
Gammaproteobacteria
Pantoea ananatis NN08200 [CP035034]
4246029
4245943
-
Leu
GAG
-
¡û
>C191174992
CP040095
Gammaproteobacteria
Pantoea sp. SO10 [CP040095]
560160
560246
+
Leu
GAG
-
¡û
>W141700938
JMJJ01000010
Gammaproteobacteria
Pantoea ananatis LMG 2665 [JMJJ]
284434
284520
+
Leu
GAG
[ENA]
¡û
>W141701002
JMJK01000010
Gammaproteobacteria
Pantoea ananatis [JMJK]
282302
282388
+
Leu
GAG
[ENA]
¡û
>W141701064
JMJL01000010
Gammaproteobacteria
Pantoea ananatis BD442 [JMJL]
342857
342943
+
Leu
GAG
[ENA]
¡û
>W1910928772
NIRH01000005
Gammaproteobacteria
Pantoea sp. AMG 501 [NIRH]
244576
244662
+
Leu
GAG
[ENA]
¡û
>W1910994182
NKXT01000006
Gammaproteobacteria
Pantoea ananatis 1.38 [NKXT]
95754
95668
-
Leu
GAG
[ENA]
¡û
>W1911081337
NMZR01000007
Gammaproteobacteria
Pantoea ananatis PANS 99-3 [NMZR]
113859
113945
+
Leu
GAG
[ENA]
¡û
>W1911081365
NMZS01000002
Gammaproteobacteria
Pantoea ananatis PANS 99-23 [NMZS]
244795
244881
+
Leu
GAG
[ENA]
¡û
>W1911081473
NMZT01000007
Gammaproteobacteria
Pantoea ananatis PANS 99-36 [NMZT]
97181
97095
-
Leu
GAG
[ENA]
¡û
>W1911081548
NMZU01000005
Gammaproteobacteria
Pantoea ananatis PANS 01-2 [NMZU]
104585
104499
-
Leu
GAG
[ENA]
¡û
>W1911081590
NMZV01000002
Gammaproteobacteria
Pantoea ananatis PANS 04-2 [NMZV]
247212
247298
+
Leu
GAG
[ENA]
¡û
>W1911081661
NMZW01000002
Gammaproteobacteria
Pantoea ananatis PNA 99-7 [NMZW]
247554
247640
+
Leu
GAG
[ENA]
¡û
>W1911081762
NMZX01000005
Gammaproteobacteria
Pantoea ananatis PNA 200-3 [NMZX]
98514
98428
-
Leu
GAG
[ENA]
¡û
>W1911081806
NMZY01000002
Gammaproteobacteria
Pantoea ananatis PNA 06-1 [NMZY]
345389
345475
+
Leu
GAG
[ENA]
¡û
>W1911081875
NMZZ01000002
Gammaproteobacteria
Pantoea ananatis PNA 15-1 [NMZZ]
464232
464146
-
Leu
GAG
[ENA]
¡û
>W1911284344
NTMH01000030
Gammaproteobacteria
Pantoea allii LMG 24248 [NTMH]
167512
167598
+
Leu
GAG
[ENA]
¡û
>W1911492782
OBEC01000005
Gammaproteobacteria
Pantoea sp. GL120224-02 [OBEC]
57835
57921
+
Leu
GAG
[ENA]
¡û
>W1911496873
OCMY01000001
Gammaproteobacteria
Pantoea floridensis JKS000234 [OCMY]
1337002
1336916
-
Leu
GAG
[ENA]
¡û
>W1810071429
PEES01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000233 [PEES]
3076330
3076244
-
Leu
GAG
[ENA]
¡û
>W1810073244
PEFU01000003
Gammaproteobacteria
Pantoea sp. BRM17 [PEFU]
191061
191147
+
Leu
GAG
[ENA]
¡û
>W1810147275
PIQI01000031
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
287660
287746
+
Leu
GAG
[ENA]
¡û
>W1810177735
PJRT01000009
Gammaproteobacteria
Pantoea endophytica 596 [PJRT]
316762
316676
-
Leu
GAG
[ENA]
¡û
>W1810226435
POWL01000003
Gammaproteobacteria
Pantoea sp. ICBG 1758 [POWL]
268047
267961
-
Leu
GAG
[ENA]
¡û
>W1810326483
PUGB01000002
Gammaproteobacteria
Pantoea ananatis ARC311 [PUGB]
30013
29927
-
Leu
GAG
[ENA]
¡û
>W1810326579
PUGC01000058
Gammaproteobacteria
Pantoea ananatis ARC310 [PUGC]
27146
27060
-
Leu
GAG
[ENA]
¡û
>W1810326641
PUGD01000003
Gammaproteobacteria
Pantoea ananatis ARC272 [PUGD]
49573
49659
+
Leu
GAG
[ENA]
¡û
>W1810501547
QBJB02000010
Gammaproteobacteria
Pantoea sp. RIT 413 [QBJB]
72260
72346
+
Leu
GAG
[ENA]
¡û
>W1810573428
QEKS01000004
Gammaproteobacteria
Pantoea ananatis PNA 14-1 [QEKS]
440000
439914
-
Leu
GAG
[ENA]
¡û
>W1810596454
QGGN01000003
Gammaproteobacteria
Pantoea ananatis PNA 200-7 [QGGN]
82023
81937
-
Leu
GAG
[ENA]
¡û
>W1810597357
QGHF01000002
Gammaproteobacteria
Pantoea allii PNA 200-10 [QGHF]
358034
357948
-
Leu
GAG
[ENA]
¡û
>W1810608561
QGTK01000005
Gammaproteobacteria
Pantoea ananatis PNA 11-1 [QGTK]
247201
247287
+
Leu
GAG
[ENA]
¡û
>W1810608782
QGTO01000004
Gammaproteobacteria
Pantoea ananatis PNA 98-11 [QGTO]
461112
461026
-
Leu
GAG
[ENA]
¡û
>W1810609146
QGTU01000002
Gammaproteobacteria
Pantoea sp. AG702 [QGTU]
244328
244414
+
Leu
GAG
[ENA]
¡û
>W1810628532
QICO01000002
Gammaproteobacteria
Pantoea sp. PNA 03-3 [QICO]
404092
404006
-
Leu
GAG
[ENA]
¡û
>W1810628840
QICU01000002
Gammaproteobacteria
Pantoea ananatis PNA 07-1 [QICU]
451652
451566
-
Leu
GAG
[ENA]
¡û
>W1810676981
QKMJ01000011
Gammaproteobacteria
Pantoea sp. AG1095 [QKMJ]
58151
58065
-
Leu
GAG
[ENA]
¡û
>W1810696043
QLSY01000003
Gammaproteobacteria
Pantoea ananatis PNA 86-1 [QLSY]
437163
437077
-
Leu
GAG
[ENA]
¡û
>W1810722735
QNVM01000001
Gammaproteobacteria
Pantoea sp. 3_1284 [QNVM]
431439
431525
+
Leu
GAG
[ENA]
¡û
>W1810786925
QRDI01000004
Gammaproteobacteria
Pantoea ananatis PANS 02-01 [QRDI]
431155
431069
-
Leu
GAG
[ENA]
¡û
>W1810861017
QTTO01000004
Gammaproteobacteria
Pantoea ananatis PNA 07-10 [QTTO]
244555
244641
+
Leu
GAG
[ENA]
¡û
>W1810861383
QTTV01000003
Gammaproteobacteria
Pantoea ananatis PANS 200-1 [QTTV]
247243
247329
+
Leu
GAG
[ENA]
¡û
>C151051567
CP009454
Gammaproteobacteria
Pantoea rwandensis ND04 [CP009454]
4184435
4184349
-
Leu
GAG
[Ensembl]
¡û
>C151061126
CP009880
Gammaproteobacteria
Pantoea sp. PSNIH1 [CP009880]
1588088
1588174
+
Leu
GAG
[Ensembl]
¡û
>W1510092981
CEFO01000002
Gammaproteobacteria
Enterobacter ludwigii EnVs6 [CEFO]
1007054
1006968
-
Leu
GAG
[ENA]
¡û
>W1510093107
CEFQ01000001
Gammaproteobacteria
Enterobacter ludwigii EnVs2 [CEFQ]
326328
326242
-
Leu
GAG
[ENA]
¡û
>W1510093208
CEFR01000012
Gammaproteobacteria
Enterobacter ludwigii LecVs2 [CEFR]
54590
54504
-
Leu
GAG
[ENA]
¡û
>C10110057
CP001875
Gammaproteobacteria
Pantoea ananatis LMG 20103 [CP001875]
524827
524913
+
Leu
GAG
[Ensembl]
¡û
>WENV11100702
AEWW01015594
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
8717
8803
+
Leu
GAG
[ENA]
¡û
>W1510644106
CVNF01000005
Gammaproteobacteria
Pantoea ananatis S6 [CVNF]
58526
58612
+
Leu
GAG
[ENA]
¡û
>W1510644173
CVNG01000003
Gammaproteobacteria
Pantoea ananatis S7 [CVNG]
247653
247739
+
Leu
GAG
[ENA]
¡û
>W1510644241
CVNH01000004
Gammaproteobacteria
Pantoea ananatis S8 [CVNH]
246763
246849
+
Leu
GAG
[ENA]
¡û
>C11116636
AP012032
Gammaproteobacteria
Pantoea ananatis AJ13355 [AP012032]
4309556
4309642
+
Leu
GAG
[Ensembl]
¡û
>W1511304327
JPKO01000023
Gammaproteobacteria
Pantoea stewartii subsp. indologenes LMG 2632 [JPKO]
231181
231267
+
Leu
GAG
[ENA]
¡û
>W1511336170
JQZZ01000163
Gammaproteobacteria
Pantoea ananatis PaMB1 [JQZZ]
84449
84363
-
Leu
GAG
[ENA]
¡û
>W1511356714
JRUP01000018
Gammaproteobacteria
Enterobacter cancerogenus M004 [JRUP]
259389
259303
-
Leu
GAG
[ENA]
¡û
>W1511357416
JRWI01000007
Gammaproteobacteria
Pantoea stewartii M009 [JRWI]
54182
54268
+
Leu
GAG
[ENA]
¡û
>W1511390042
JSXF01000009
Gammaproteobacteria
Pantoea stewartii M073a [JSXF]
384371
384285
-
Leu
GAG
[ENA]
¡û
>W1511402142
JTJJ01000006
Gammaproteobacteria
Pantoea rodasii ND03 [JTJJ]
72628
72714
+
Leu
GAG
[ENA]
¡û
>W1511547686
JZRD01000029
Gammaproteobacteria
Pantoea sp. SM3 [JZRD]
57421
57507
+
Leu
GAG
[ENA]
¡û
>W1511547931
JZRH01000021
Gammaproteobacteria
Pantoea sp. BL1 [JZRH]
83637
83551
-
Leu
GAG
[ENA]
¡û
>W1511590200
LBFU01000111
Gammaproteobacteria
Pantoea ananatis MR5 [LBFU]
8623
8537
-
Leu
GAG
[ENA]
¡û
>W1511683944
LFLX01000002
Gammaproteobacteria
Pantoea ananatis CFH 7-1 [LFLX]
728221
728307
+
Leu
GAG
[ENA]
¡û
>W1511699716
LGIS01000014
Gammaproteobacteria
Pantoea sp. RIT-PI-b [LGIS]
240019
240105
+
Leu
GAG
[ENA]
¡û
>W11177943
AGCA01000425
Gammaproteobacteria
Candidatus Regiella insecticola insecticola R5.15 [AGCA]
10227
10141
-
Leu
GAG
[ENA]
¡û
>W11187489
CAEI01000157
Gammaproteobacteria
Pantoea ananatis [CAEI]
66462
66548
+
Leu
GAG
[ENA]
¡û
>W11187525
CAEJ01000038
Gammaproteobacteria
Pantoea ananatis [CAEJ]
65684
65770
+
Leu
GAG
[ENA]
¡û
>C121005463
CP003085
Gammaproteobacteria
Pantoea ananatis PA13 [CP003085]
4056333
4056247
-
Leu
GAG
[Ensembl]
¡û
>C121018309
HE617160
Gammaproteobacteria
Pantoea ananatis LMG 5342 [HE617160]
4069503
4069417
-
Leu
GAG
[Ensembl]
¡û
>C161035389
CP011427
Gammaproteobacteria
Pantoea vagans ND02 [CP011427]
3529742
3529656
-
Leu
GAG
[Ensembl]
¡û
>C161068304
CP014207
Gammaproteobacteria
Pantoea ananatis R100 [CP014207]
1401477
1401563
+
Leu
GAG
-
¡û
>W1610053209
BBOC01000042
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
23602
23516
-
Leu
GAG
[ENA]
¡û
>W1610053255
BBOD01000003
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
166231
166145
-
Leu
GAG
[ENA]
¡û
>W121032816
AHIE01000037
Gammaproteobacteria
Pantoea stewartii subsp. stewartii DC283 [AHIE]
249156
249242
+
Leu
GAG
[ENA]
¡û
>W121084806
AKIT01000032
Gammaproteobacteria
Pantoea sp. YR343 [AKIT]
54636
54550
-
Leu
GAG
[ENA]
¡û
>W121084839
AKIU01000025
Gammaproteobacteria
Pantoea sp. GM01 [AKIU]
131053
131139
+
Leu
GAG
[ENA]
¡û
>W1610589715
LDQX01000001
Gammaproteobacteria
Pantoea ananatis [LDQX]
109356
109442
+
Leu
GAG
[ENA]
¡û
>W1610589790
LDQY01000005
Gammaproteobacteria
Pantoea ananatis [LDQY]
69787
69873
+
Leu
GAG
[ENA]
¡û
>W1610589874
LDQZ01000032
Gammaproteobacteria
Pantoea ananatis [LDQZ]
75931
76017
+
Leu
GAG
[ENA]
¡û
>W1610589906
LDRA01000004
Gammaproteobacteria
Pantoea ananatis [LDRA]
75931
76017
+
Leu
GAG
[ENA]
¡û
>W1610591702
LDSH01000020
Gammaproteobacteria
Pantoea stewartii [LDSH]
73293
73207
-
Leu
GAG
[ENA]
¡û
>W1610591770
LDSI01000025
Gammaproteobacteria
Pantoea stewartii [LDSI]
37382
37468
+
Leu
GAG
[ENA]
¡û
>W1610591842
LDSJ01000025
Gammaproteobacteria
Pantoea stewartii [LDSJ]
314794
314880
+
Leu
GAG
[ENA]
¡û
>W1610591877
LDSK01000004
Gammaproteobacteria
Pantoea stewartii [LDSK]
315229
315315
+
Leu
GAG
[ENA]
¡û
>W1610629045
LIHC01000013
Gammaproteobacteria
Pantoea stewartii [LIHC]
390552
390466
-
Leu
GAG
[ENA]
¡û
>W1610630836
LIIU01000018
Gammaproteobacteria
Pantoea stewartii [LIIU]
369668
369582
-
Leu
GAG
[ENA]
¡û
>W1610748080
LMYG01000034
Gammaproteobacteria
Pantoea ananatis [LMYG]
243298
243384
+
Leu
GAG
[ENA]
¡û
>W1610990048
LWLR01000001
Gammaproteobacteria
Pantoea sp. OXWO6B1 [LWLR]
1117336
1117422
+
Leu
GAG
[ENA]
¡û
>W1611061889
MAYN01000008
Gammaproteobacteria
Pantoea eucrina [MAYN]
2444833
2444747
-
Leu
GAG
[ENA]
¡û
>W1710049587
BBOC01000042
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
23602
23516
-
Leu
GAG
[ENA]
¡û
>W1710049633
BBOD01000003
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
166231
166145
-
Leu
GAG
[ENA]
¡û
>W1710566677
FOSD01000005
Gammaproteobacteria
Pantoea symbiotica YR512 [FOSD]
84089
84175
+
Leu
GAG
[ENA]
¡û
>W1710578711
FPBU01000005
Gammaproteobacteria
Pantoea sp. YR525 [FPBU]
84089
84175
+
Leu
GAG
[ENA]
¡û
>W1710580665
FPJM01000003
Gammaproteobacteria
Pantoea ananatis [FPJM]
247277
247363
+
Leu
GAG
[ENA]
¡û
>W1710602090
FUXY01000002
Gammaproteobacteria
Pantoea ananatis [FUXY]
425560
425474
-
Leu
GAG
[ENA]
¡û
>W1710708995
LDQX01000001
Gammaproteobacteria
Pantoea ananatis [LDQX]
109356
109442
+
Leu
GAG
[ENA]
¡û
>W1710709070
LDQY01000005
Gammaproteobacteria
Pantoea ananatis [LDQY]
69787
69873
+
Leu
GAG
[ENA]
¡û
>W1710709154
LDQZ01000032
Gammaproteobacteria
Pantoea ananatis [LDQZ]
75931
76017
+
Leu
GAG
[ENA]
¡û
>W1710709186
LDRA01000004
Gammaproteobacteria
Pantoea ananatis [LDRA]
75931
76017
+
Leu
GAG
[ENA]
¡û
>W1710710982
LDSH01000020
Gammaproteobacteria
Pantoea stewartii [LDSH]
73293
73207
-
Leu
GAG
[ENA]
¡û
>W1710711050
LDSI01000025
Gammaproteobacteria
Pantoea stewartii [LDSI]
37382
37468
+
Leu
GAG
[ENA]
¡û
>W1710711122
LDSJ01000025
Gammaproteobacteria
Pantoea stewartii [LDSJ]
314794
314880
+
Leu
GAG
[ENA]
¡û
>W1710711157
LDSK01000004
Gammaproteobacteria
Pantoea stewartii [LDSK]
315229
315315
+
Leu
GAG
[ENA]
¡û
>W1710760178
LIHC01000013
Gammaproteobacteria
Pantoea stewartii [LIHC]
390552
390466
-
Leu
GAG
[ENA]
¡û
>W1710762175
LIIU01000018
Gammaproteobacteria
Pantoea stewartii [LIIU]
369668
369582
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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