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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73164 (95 seq.)
>W1710886857
LMYG01000077
Gammaproteobacteria
Pantoea ananatis [LMYG]
149881
149795
-
Leu
TAA
[ENA]
¡û
>W1711184180
LWLR01000001
Gammaproteobacteria
Pantoea sp. OXWO6B1 [LWLR]
2212285
2212371
+
Leu
TAA
[ENA]
¡û
>W1711437542
MIPO01000013
Gammaproteobacteria
Pantoea deleyi [MIPO]
4533
4447
-
Leu
TAA
[ENA]
¡û
>W1711512744
MLFE01000016
Gammaproteobacteria
Pantoea allii [MLFE]
95251
95165
-
Leu
TAA
[ENA]
¡û
>W1711517181
MLJI01000001
Gammaproteobacteria
Pantoea cypripedii [MLJI]
1547603
1547689
+
Leu
TAA
[ENA]
¡û
>C171063858
CP017581
Gammaproteobacteria
Pantoea stewartii subsp. stewartii DC283 [CP017581]
2099650
2099736
+
Leu
TAA
-
¡û
>W141071634
ASJH01000036
Gammaproteobacteria
Pantoea ananatis BRT175 [ASJH]
144411
144325
-
Leu
TAA
[ENA]
¡û
>W141074750
ASZC01000002
Gammaproteobacteria
Pantoea sp. AS-PWVM4 [ASZC]
472900
472986
+
Leu
TAA
[ENA]
¡û
>W141214610
AZTE01000038
Gammaproteobacteria
Pantoea ananatis Sd-1 [AZTE]
9009
9095
+
Leu
TAA
[ENA]
¡û
>W141230683
BATH01000001
Gammaproteobacteria
Pantoea ananatis DAR 76143 [BATH]
232922
233008
+
Leu
TAA
[ENA]
¡û
>WENV170001951
AGFT01048301
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
144
230
+
Leu
TAA
[ENA]
¢þ
>W141485794
JFZU01000006
Gammaproteobacteria
Pantoea ananatis LMG 2665 [JFZU]
401751
401837
+
Leu
TAA
[ENA]
¡û
>C181064752
CP022427
Gammaproteobacteria
Pantoea ananatis YJ76 [CP022427]
2363913
2363827
-
Leu
TAA
-
¡û
>C191134123
CP035034
Gammaproteobacteria
Pantoea ananatis NN08200 [CP035034]
3127619
3127533
-
Leu
TAA
-
¡û
>W141700890
JMJJ01000004
Gammaproteobacteria
Pantoea ananatis LMG 2665 [JMJJ]
614936
615022
+
Leu
TAA
[ENA]
¡û
>W141700952
JMJK01000003
Gammaproteobacteria
Pantoea ananatis [JMJK]
404282
404368
+
Leu
TAA
[ENA]
¡û
>W141701019
JMJL01000002
Gammaproteobacteria
Pantoea ananatis BD442 [JMJL]
572726
572812
+
Leu
TAA
[ENA]
¡û
>W1910928745
NIRH01000002
Gammaproteobacteria
Pantoea sp. AMG 501 [NIRH]
628413
628499
+
Leu
TAA
[ENA]
¡û
>W1910994157
NKXT01000001
Gammaproteobacteria
Pantoea ananatis 1.38 [NKXT]
157322
157236
-
Leu
TAA
[ENA]
¡û
>W1911081323
NMZR01000003
Gammaproteobacteria
Pantoea ananatis PANS 99-3 [NMZR]
669319
669405
+
Leu
TAA
[ENA]
¡û
>W1911081399
NMZS01000004
Gammaproteobacteria
Pantoea ananatis PANS 99-23 [NMZS]
1882
1796
-
Leu
TAA
[ENA]
¡û
>W1911081441
NMZT01000002
Gammaproteobacteria
Pantoea ananatis PANS 99-36 [NMZT]
681221
681307
+
Leu
TAA
[ENA]
¡û
>W1911081530
NMZU01000002
Gammaproteobacteria
Pantoea ananatis PANS 01-2 [NMZU]
188524
188438
-
Leu
TAA
[ENA]
¡û
>W1911081614
NMZV01000003
Gammaproteobacteria
Pantoea ananatis PANS 04-2 [NMZV]
1874
1788
-
Leu
TAA
[ENA]
¡û
>W1911081696
NMZW01000004
Gammaproteobacteria
Pantoea ananatis PNA 99-7 [NMZW]
1859
1773
-
Leu
TAA
[ENA]
¡û
>W1911081760
NMZX01000004
Gammaproteobacteria
Pantoea ananatis PNA 200-3 [NMZX]
144346
144260
-
Leu
TAA
[ENA]
¡û
>W1911081830
NMZY01000003
Gammaproteobacteria
Pantoea ananatis PNA 06-1 [NMZY]
34978
34892
-
Leu
TAA
[ENA]
¡û
>W1911081888
NMZZ01000003
Gammaproteobacteria
Pantoea ananatis PNA 15-1 [NMZZ]
681669
681755
+
Leu
TAA
[ENA]
¡û
>W1911284371
NTMH01000040
Gammaproteobacteria
Pantoea allii LMG 24248 [NTMH]
306851
306937
+
Leu
TAA
[ENA]
¡û
>W1810326348
PUFZ01000004
Gammaproteobacteria
Pantoea sp. ARC607 [PUFZ]
18027
18113
+
Leu
TAA
[ENA]
¡û
>W1810326436
PUGA01000016
Gammaproteobacteria
Pantoea sp. ARC270 [PUGA]
38193
38107
-
Leu
TAA
[ENA]
¡û
>W1810326490
PUGB01000004
Gammaproteobacteria
Pantoea ananatis ARC311 [PUGB]
55936
56022
+
Leu
TAA
[ENA]
¡û
>W1810326597
PUGC01000148
Gammaproteobacteria
Pantoea ananatis ARC310 [PUGC]
6962
7048
+
Leu
TAA
[ENA]
¡û
>W1810326672
PUGD01000059
Gammaproteobacteria
Pantoea ananatis ARC272 [PUGD]
34916
35002
+
Leu
TAA
[ENA]
¡û
>W1810573399
QEKS01000001
Gammaproteobacteria
Pantoea ananatis PNA 14-1 [QEKS]
690928
691014
+
Leu
TAA
[ENA]
¡û
>W1810596430
QGGN01000001
Gammaproteobacteria
Pantoea ananatis PNA 200-7 [QGGN]
414167
414253
+
Leu
TAA
[ENA]
¡û
>W1810597381
QGHF01000004
Gammaproteobacteria
Pantoea allii PNA 200-10 [QGHF]
544379
544465
+
Leu
TAA
[ENA]
¡û
>W1810608539
QGTK01000003
Gammaproteobacteria
Pantoea ananatis PNA 11-1 [QGTK]
397461
397547
+
Leu
TAA
[ENA]
¡û
>W1810608755
QGTO01000001
Gammaproteobacteria
Pantoea ananatis PNA 98-11 [QGTO]
944422
944336
-
Leu
TAA
[ENA]
¡û
>W1810609132
QGTU01000001
Gammaproteobacteria
Pantoea sp. AG702 [QGTU]
414503
414589
+
Leu
TAA
[ENA]
¡û
>W1810628524
QICO01000001
Gammaproteobacteria
Pantoea sp. PNA 03-3 [QICO]
977024
976938
-
Leu
TAA
[ENA]
¡û
>W1810628828
QICU01000001
Gammaproteobacteria
Pantoea ananatis PNA 07-1 [QICU]
669694
669780
+
Leu
TAA
[ENA]
¡û
>W1810696019
QLSY01000001
Gammaproteobacteria
Pantoea ananatis PNA 86-1 [QLSY]
700549
700635
+
Leu
TAA
[ENA]
¡û
>W1810786913
QRDI01000003
Gammaproteobacteria
Pantoea ananatis PANS 02-01 [QRDI]
401338
401424
+
Leu
TAA
[ENA]
¡û
>W1810861010
QTTO01000002
Gammaproteobacteria
Pantoea ananatis PNA 07-10 [QTTO]
162867
162781
-
Leu
TAA
[ENA]
¡û
>W1810861357
QTTV01000001
Gammaproteobacteria
Pantoea ananatis PANS 200-1 [QTTV]
707667
707753
+
Leu
TAA
[ENA]
¡û
>W10106259
ACYJ01000031
Gammaproteobacteria
Pantoea sp. At-9b [ACYJ]
15985
16071
+
Leu
TAA
[ENA]
¡û
>C10110071
CP001875
Gammaproteobacteria
Pantoea ananatis LMG 20103 [CP001875]
1610382
1610468
+
Leu
TAA
[Ensembl]
¡û
>WENV11102023
AGFT01048301
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
144
230
+
Leu
TAA
[ENA]
¡û
>W1510644132
CVNF01000021
Gammaproteobacteria
Pantoea ananatis S6 [CVNF]
161639
161725
+
Leu
TAA
[ENA]
¡û
>W1510644198
CVNG01000017
Gammaproteobacteria
Pantoea ananatis S7 [CVNG]
161621
161707
+
Leu
TAA
[ENA]
¡û
>W1510644265
CVNH01000018
Gammaproteobacteria
Pantoea ananatis S8 [CVNH]
161727
161813
+
Leu
TAA
[ENA]
¡û
>W11108582
ACYJ01000031
Gammaproteobacteria
Pantoea sp. At-9b [ACYJ]
15985
16071
+
Leu
TAA
[ENA]
¡û
>C11116606
AP012032
Gammaproteobacteria
Pantoea ananatis AJ13355 [AP012032]
885187
885273
+
Leu
TAA
[Ensembl]
¡û
>C11116701
CP002433
Gammaproteobacteria
Pantoea sp. At-9b [CP002433]
1578129
1578215
+
Leu
TAA
[Ensembl]
¡û
>W1511304316
JPKO01000007
Gammaproteobacteria
Pantoea stewartii subsp. indologenes LMG 2632 [JPKO]
162287
162201
-
Leu
TAA
[ENA]
¡û
>W1511336202
JQZZ01000176
Gammaproteobacteria
Pantoea ananatis PaMB1 [JQZZ]
307297
307383
+
Leu
TAA
[ENA]
¡û
>W1511357405
JRWI01000001
Gammaproteobacteria
Pantoea stewartii M009 [JRWI]
158239
158325
+
Leu
TAA
[ENA]
¡û
>W1511390064
JSXF01000014
Gammaproteobacteria
Pantoea stewartii M073a [JSXF]
772004
771918
-
Leu
TAA
[ENA]
¡û
>W1511517602
JXXL01000007
Gammaproteobacteria
Pantoea anthophila 11·î2Æü [JXXL]
530472
530558
+
Leu
TAA
[ENA]
¡û
>W1511590192
LBFU01000043
Gammaproteobacteria
Pantoea ananatis MR5 [LBFU]
12958
13044
+
Leu
TAA
[ENA]
¡û
>W1511683922
LFLX01000001
Gammaproteobacteria
Pantoea ananatis CFH 7-1 [LFLX]
1960035
1959949
-
Leu
TAA
[ENA]
¡û
>W11187470
CAEI01000122
Gammaproteobacteria
Pantoea ananatis [CAEI]
262483
262569
+
Leu
TAA
[ENA]
¡û
>W11187513
CAEJ01000026
Gammaproteobacteria
Pantoea ananatis [CAEJ]
319484
319570
+
Leu
TAA
[ENA]
¡û
>C121005478
CP003085
Gammaproteobacteria
Pantoea ananatis PA13 [CP003085]
2943568
2943482
-
Leu
TAA
[Ensembl]
¡û
>C121018324
HE617160
Gammaproteobacteria
Pantoea ananatis LMG 5342 [HE617160]
2978585
2978499
-
Leu
TAA
[Ensembl]
¡û
>C161068319
CP014207
Gammaproteobacteria
Pantoea ananatis R100 [CP014207]
2510845
2510931
+
Leu
TAA
-
¡û
>W1610053348
BBOE01000028
Gammaproteobacteria
Type-F symbiont of Plautia stali [BBOE]
21521
21435
-
Leu
TAA
[ENA]
¡û
>W121032784
AHIE01000009
Gammaproteobacteria
Pantoea stewartii subsp. stewartii DC283 [AHIE]
34
120
+
Leu
TAA
[ENA]
¡û
>W121060426
AJFP01000001
Gammaproteobacteria
Pantoea sp. Sc1 [AJFP]
2649697
2649611
-
Leu
TAA
[ENA]
¡û
>W1610589726
LDQX01000003
Gammaproteobacteria
Pantoea ananatis [LDQX]
160652
160738
+
Leu
TAA
[ENA]
¡û
>W1610589823
LDQY01000018
Gammaproteobacteria
Pantoea ananatis [LDQY]
16548
16634
+
Leu
TAA
[ENA]
¡û
>W1610589887
LDQZ01000037
Gammaproteobacteria
Pantoea ananatis [LDQZ]
38232
38146
-
Leu
TAA
[ENA]
¡û
>W1610589929
LDRA01000010
Gammaproteobacteria
Pantoea ananatis [LDRA]
314566
314652
+
Leu
TAA
[ENA]
¡û
>W1610591714
LDSH01000025
Gammaproteobacteria
Pantoea stewartii [LDSH]
1810
1724
-
Leu
TAA
[ENA]
¡û
>W1610591738
LDSI01000008
Gammaproteobacteria
Pantoea stewartii [LDSI]
41779
41693
-
Leu
TAA
[ENA]
¡û
>W1610591828
LDSJ01000019
Gammaproteobacteria
Pantoea stewartii [LDSJ]
312434
312520
+
Leu
TAA
[ENA]
¡û
>W1610591869
LDSK01000001
Gammaproteobacteria
Pantoea stewartii [LDSK]
22612
22526
-
Leu
TAA
[ENA]
¡û
>W1610629040
LIHC01000012
Gammaproteobacteria
Pantoea stewartii [LIHC]
147057
146971
-
Leu
TAA
[ENA]
¡û
>W1610630829
LIIU01000015
Gammaproteobacteria
Pantoea stewartii [LIIU]
195006
194920
-
Leu
TAA
[ENA]
¡û
>W1610748119
LMYG01000077
Gammaproteobacteria
Pantoea ananatis [LMYG]
149881
149795
-
Leu
TAA
[ENA]
¡û
>W1610990062
LWLR01000001
Gammaproteobacteria
Pantoea sp. OXWO6B1 [LWLR]
2212285
2212371
+
Leu
TAA
[ENA]
¡û
>W1710049726
BBOE01000028
Gammaproteobacteria
Type-F symbiont of Plautia stali [BBOE]
21521
21435
-
Leu
TAA
[ENA]
¡û
>W1710580658
FPJM01000002
Gammaproteobacteria
Pantoea ananatis [FPJM]
643267
643353
+
Leu
TAA
[ENA]
¡û
>W1710602066
FUXY01000001
Gammaproteobacteria
Pantoea ananatis [FUXY]
402601
402687
+
Leu
TAA
[ENA]
¡û
>W1710709006
LDQX01000003
Gammaproteobacteria
Pantoea ananatis [LDQX]
160652
160738
+
Leu
TAA
[ENA]
¡û
>W1710709103
LDQY01000018
Gammaproteobacteria
Pantoea ananatis [LDQY]
16548
16634
+
Leu
TAA
[ENA]
¡û
>W1710709167
LDQZ01000037
Gammaproteobacteria
Pantoea ananatis [LDQZ]
38232
38146
-
Leu
TAA
[ENA]
¡û
>W1710709209
LDRA01000010
Gammaproteobacteria
Pantoea ananatis [LDRA]
314566
314652
+
Leu
TAA
[ENA]
¡û
>W1710710994
LDSH01000025
Gammaproteobacteria
Pantoea stewartii [LDSH]
1810
1724
-
Leu
TAA
[ENA]
¡û
>W1710711018
LDSI01000008
Gammaproteobacteria
Pantoea stewartii [LDSI]
41779
41693
-
Leu
TAA
[ENA]
¡û
>W1710711108
LDSJ01000019
Gammaproteobacteria
Pantoea stewartii [LDSJ]
312434
312520
+
Leu
TAA
[ENA]
¡û
>W1710711149
LDSK01000001
Gammaproteobacteria
Pantoea stewartii [LDSK]
22612
22526
-
Leu
TAA
[ENA]
¡û
>W1710760173
LIHC01000012
Gammaproteobacteria
Pantoea stewartii [LIHC]
147057
146971
-
Leu
TAA
[ENA]
¡û
>W1710762168
LIIU01000015
Gammaproteobacteria
Pantoea stewartii [LIIU]
195006
194920
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK