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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73407 (25 seq.)
>W1711092359
LTEA01000121
Bacillota
Pediococcus damnosus [LTEA]
15227
15142
-
Leu
CAG
[ENA]
¡û
>W1711218581
LXND01000023
Bacillota
Pediococcus parvulus [LXND]
17104
17187
+
Leu
CAG
[ENA]
¡û
>W141236526
BBIM01000023
Bacillota
Pediococcus inopinatus [BBIM]
58719
58634
-
Leu
CAG
[ENA]
¡û
>WENV183218037
OLQI01009372
[OLQI] human gut metagenome; faeces
168
251
+
Leu
CAG
[ENA]
¢þ
>C181042105
CP019981
Bacillota
Pediococcus inopinatus DSM 20285 [CP019981]
619148
619063
-
Leu
CAG
-
¡û
>W1910792157
MRAF01000001
Bacillota
Pediococcus damnosus P58 [MRAF]
367152
367237
+
Leu
CAG
[ENA]
¡û
>W1910841677
NAEQ01000002
Bacillota
Pediococcus damnosus VTT E-123216 [NAEQ]
1740276
1740191
-
Leu
CAG
[ENA]
¡û
>W1910841708
NAER01000002
Bacillota
Pediococcus damnosus VTT E-123212 [NAER]
353022
353107
+
Leu
CAG
[ENA]
¡û
>W1510765725
JANK01000064
Bacillota
Pediococcus damnosus LMG 28219 [JANK]
15779
15694
-
Leu
CAG
[ENA]
¡û
>C161040681
CP012269
Bacillota
Pediococcus damnosus TMW 2.1532 [CP012269]
1715493
1715408
-
Leu
CAG
-
¡û
>C161040723
CP012275
Bacillota
Pediococcus damnosus TMW 2.1533 [CP012275]
611217
611302
+
Leu
CAG
-
¡û
>C161040800
CP012283
Bacillota
Pediococcus damnosus TMW 2.1534 [CP012283]
1814734
1814649
-
Leu
CAG
-
¡û
>C161040858
CP012288
Bacillota
Pediococcus damnosus TMW 2.1535 [CP012288]
1872554
1872469
-
Leu
CAG
[Ensembl]
¡û
>C161040919
CP012294
Bacillota
Pediococcus damnosus TMW 2.1536 [CP012294]
1773057
1772972
-
Leu
CAG
-
¡û
>W1610528325
JQBC01000043
Bacillota
Pediococcus inopinatus [JQBC]
142
57
-
Leu
CAG
[ENA]
¡û
>W1610528327
JQBD01000004
Bacillota
Pediococcus damnosus [JQBD]
13037
12952
-
Leu
CAG
[ENA]
¡û
>W1610528931
JQBR01000001
Bacillota
Pediococcus cellicola [JQBR]
343464
343381
-
Leu
CAG
[ENA]
¡û
>W1610529272
JQBY01000011
Bacillota
Pediococcus ethanolidurans [JQBY]
18254
18168
-
Leu
CAG
[ENA]
¡û
>W1610926397
LTEA01000121
Bacillota
Pediococcus damnosus [LTEA]
15227
15142
-
Leu
CAG
[ENA]
¡û
>W1611003397
LXND01000023
Bacillota
Pediococcus parvulus [LXND]
17104
17187
+
Leu
CAG
[ENA]
¡û
>W1710551850
FOGK01000010
Bacillota
Pediococcus ethanolidurans [FOGK]
55123
55209
+
Leu
CAG
[ENA]
¡û
>W1710629915
JQBC01000043
Bacillota
Pediococcus inopinatus [JQBC]
142
57
-
Leu
CAG
[ENA]
¡û
>W1710629917
JQBD01000004
Bacillota
Pediococcus damnosus [JQBD]
13037
12952
-
Leu
CAG
[ENA]
¡û
>W1710630521
JQBR01000001
Bacillota
Pediococcus cellicola [JQBR]
343464
343381
-
Leu
CAG
[ENA]
¡û
>W1710630862
JQBY01000011
Bacillota
Pediococcus ethanolidurans [JQBY]
18254
18168
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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