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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73415 (43 seq.)
>W1711384988
MEDQ01000015
Betaproteobacteria
Bordetella sp. SCN 67-23 [MEDQ]
588
502
-
Tyr
GTA
[ENA]
¡û
>W1711504463
MKUP01000006
Betaproteobacteria
Burkholderiales bacterium 67-32 [MKUP]
339397
339483
+
Tyr
GTA
[ENA]
¡û
>W1712102740
NINW01000025
Betaproteobacteria
Pigmentiphaga sp. NML080357 [NINW]
58786
58872
+
Tyr
GTA
[ENA]
¡û
>W1712102789
NINX01000029
Betaproteobacteria
Pigmentiphaga sp. NML030171 [NINX]
163028
162942
-
Tyr
GTA
[ENA]
¡û
>W1712110489
NJIG01000007
Betaproteobacteria
Achromobacter marplatensis [NJIG]
448535
448621
+
Tyr
GTA
[ENA]
¡û
>W1712110579
NJIX01000004
Betaproteobacteria
Achromobacter sp. HZ34 [NJIX]
923
837
-
Tyr
GTA
[ENA]
¡û
>W1712110609
NJIY01000003
Betaproteobacteria
Achromobacter sp. HZ28 [NJIY]
923
837
-
Tyr
GTA
[ENA]
¡û
>C171016596
CP012334
Betaproteobacteria
Bordetella sp. H567 [CP012334]
5489017
5488931
-
Tyr
GTA
-
¡û
>C171115740
CP021108
Betaproteobacteria
Bordetella genomosp. 8 AU19157 [CP021108]
6127428
6127342
-
Tyr
GTA
-
¡û
>C171115792
CP021109
Betaproteobacteria
Bordetella genomosp. 9 AU17164 [CP021109]
4545208
4545122
-
Tyr
GTA
-
¡û
>C171115839
CP021110
Betaproteobacteria
Bordetella genomosp. 9 AU14267 [CP021110]
4454968
4454882
-
Tyr
GTA
-
¡û
>WENV183728017
PJTP01017393
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
169
255
+
Tyr
GTA
[ENA]
¢þ
>WENV183730096
PJTR01000618
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
570
484
-
Tyr
GTA
[ENA]
¢þ
>WENV183730808
PJTS01000911
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
570
484
-
Tyr
GTA
[ENA]
¢þ
>WENV183742168
PJUH01000903
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
571
485
-
Tyr
GTA
[ENA]
¢þ
>WENV183742549
PJUI01000012
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
571
485
-
Tyr
GTA
[ENA]
¢þ
>WENV170706959
LNAP01009774
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
7239
7325
+
Tyr
GTA
[ENA]
¢þ
>C181111265
CP025030
Betaproteobacteria
Achromobacter spanius DSM 23806 [CP025030]
1384255
1384341
+
Tyr
GTA
-
¡û
>C191084111
CP032084
Betaproteobacteria
Achromobacter sp. B7 [CP032084]
6189751
6189665
-
Tyr
GTA
-
¡û
>C191116926
CP033966
Betaproteobacteria
Pigmentiphaga sp. H8 [CP033966]
540248
540334
+
Tyr
GTA
-
¡û
>C191129215
CP034689
Betaproteobacteria
Achromobacter spanius UQ283 [CP034689]
6644982
6644896
-
Tyr
GTA
-
¡û
>C191205184
LR134302
Betaproteobacteria
Achromobacter spanius NCTC13519 [LR134302]
2497261
2497175
-
Tyr
GTA
-
¡û
>W1910890613
NEVJ01000003
Betaproteobacteria
Bordetella genomosp. 9 9 AU21707 [NEVJ]
3424162
3424076
-
Tyr
GTA
[ENA]
¡û
>W1910890777
NEVM01000005
Betaproteobacteria
Bordetella genomosp. 10 10 AU16122 [NEVM]
3221654
3221568
-
Tyr
GTA
[ENA]
¡û
>W1910890890
NEVO01000019
Betaproteobacteria
Bordetella genomosp. 4 4 AU14378 [NEVO]
98366
98280
-
Tyr
GTA
[ENA]
¡û
>W1910890950
NEVQ01000001
Betaproteobacteria
Bordetella genomosp. 4 4 AU9919 [NEVQ]
97578
97492
-
Tyr
GTA
[ENA]
¡û
>W1910891083
NEVS01000004
Betaproteobacteria
Bordetella genomosp. 11 11 AU8856 [NEVS]
4755662
4755576
-
Tyr
GTA
[ENA]
¡û
>W1911566177
PCOQ01000002
Betaproteobacteria
Achromobacter sp. MYb9 [PCOQ]
109614
109700
+
Tyr
GTA
[ENA]
¡û
>W1911641134
PYAL01000005
Betaproteobacteria
Achromobacter aloeverae AVA-1 [PYAL]
105960
106046
+
Tyr
GTA
[ENA]
¡û
>W1810270640
PREU01000002
Betaproteobacteria
Achromobacter spanius 6 [PREU]
124487
124573
+
Tyr
GTA
[ENA]
¡û
>W1810720794
QNRM01000003
Betaproteobacteria
Achromobacter marplatensis CECT 7342 [QNRM]
569953
569867
-
Tyr
GTA
[ENA]
¡û
>W10115848
ADMS01000018
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
447
361
-
Tyr
GTA
[ENA]
¡û
>W11120345
ADMS01000018
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
447
361
-
Tyr
GTA
[ENA]
¡û
>W1511591837
LBHW01000025
Betaproteobacteria
Achromobacter sp. LC458 [LBHW]
41769
41683
-
Tyr
GTA
[ENA]
¡û
>W1511707481
LGVG01000015
Betaproteobacteria
Achromobacter spanius CGMCC9173 [LGVG]
919
833
-
Tyr
GTA
[ENA]
¡û
>C161051087
CP013111
Betaproteobacteria
Bordetella sp. N [CP013111]
5245799
5245713
-
Tyr
GTA
[Ensembl]
¡û
>C161094165
CP016170
Betaproteobacteria
Bordetella bronchialis AU3182 [CP016170]
5834747
5834661
-
Tyr
GTA
-
¡û
>C161094212
CP016171
Betaproteobacteria
Bordetella bronchialis AU17976 [CP016171]
5922932
5922846
-
Tyr
GTA
[Ensembl]
¡û
>C161094265
CP016172
Betaproteobacteria
Bordetella flabilis AU10664 [CP016172]
5790137
5790051
-
Tyr
GTA
[Ensembl]
¡û
>W1610070638
BCTK01000012
Betaproteobacteria
Achromobacter piechaudii NBRC 102461 [BCTK]
351594
351680
+
Tyr
GTA
[ENA]
¡û
>W1610093590
CYTC01000001
Betaproteobacteria
Achromobacter kerstersii ATCC31444 [CYTC]
559954
559868
-
Tyr
GTA
[ENA]
¡û
>W121111231
ALJE01000059
Betaproteobacteria
Achromobacter marplatensis HLE [ALJE]
22212
22298
+
Tyr
GTA
[ENA]
¡û
>W1710068011
BCTK01000012
Betaproteobacteria
Achromobacter piechaudii NBRC 102461 [BCTK]
351594
351680
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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