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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73416 (16 seq.)
>WENV180022346
FTFY01001183
[FTFY] metagenome; soil
1146
1232
+
Leu
TAG
[ENA]
¢þ
>WENV180026641
FTIU01008340
[FTIU] metagenome; soil
1788
1702
-
Leu
TAG
[ENA]
¢þ
>WENV180029942
FTJL01029164
[FTJL] metagenome; soil
264
350
+
Leu
TAG
[ENA]
¢þ
>WENV170639374
JFJP01002140
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6140
6226
+
Leu
TAG
[ENA]
¢þ
>W1911572379
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
4915135
4915221
+
Leu
TAG
[ENA]
¡û
>C151062594
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
2409296
2409382
+
Leu
TAG
[Ensembl]
¡û
>C11105094
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
2908307
2908221
-
Leu
TAG
[Ensembl]
¡û
>C161053615
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
3382319
3382233
-
Leu
TAG
[Ensembl]
¡û
>C161053637
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
1942023
1942109
+
Leu
TAG
-
¡û
>C161053709
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
3278681
3278595
-
Leu
TAG
[Ensembl]
¡û
>C161053733
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
1942318
1942404
+
Leu
TAG
[Ensembl]
¡û
>C161053783
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
2317578
2317664
+
Leu
TAG
[Ensembl]
¡û
>W1710530348
FNOR01000001
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
302844
302930
+
Leu
TAG
[ENA]
¡û
>W1710556439
FOKF01000002
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
334957
335043
+
Leu
TAG
[ENA]
¡û
>W1710557523
FOLC01000003
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
150751
150665
-
Leu
TAG
[ENA]
¡û
>W1710564207
FOQI01000001
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
502652
502566
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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