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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73532 (89 seq.)
>W1710807993
LKDJ01000001
Gammaproteobacteria
Acinetobacter bereziniae [LKDJ]
137246
137332
+
Leu
CAA
[ENA]
¡û
>W1710862134
LMED01000012
Gammaproteobacteria
Acinetobacter sp. Root1280 [LMED]
489906
489820
-
Leu
CAA
[ENA]
¡û
>W1711116265
LUAW01000024
Gammaproteobacteria
Acinetobacter pragensis ANC 4149 [LUAW]
70861
70947
+
Leu
CAA
[ENA]
¡û
>W1711126483
LUOQ01000087
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S29_B6 [LUOQ]
35279
35365
+
Leu
CAA
[ENA]
¡û
>W1711126648
LUOV01000047
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S44_B2 [LUOV]
40561
40647
+
Leu
CAA
[ENA]
¡û
>W1711314126
MAUF01000010
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [MAUF]
48238
48152
-
Leu
CAA
[ENA]
¡û
>W1711333458
MBPR02000013
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
85724
85810
+
Leu
CAA
[ENA]
¡û
>W1711492506
MKKK01000045
Gammaproteobacteria
Acinetobacter qingfengensis [MKKK]
12148
12062
-
Leu
CAA
[ENA]
¡û
>W1711589141
MODX01000022
Gammaproteobacteria
Acinetobacter sp. LCT-H3 [MODX]
39775
39861
+
Leu
CAA
[ENA]
¡û
>W1712003833
NEGK01000007
Gammaproteobacteria
Acinetobacter sp. ANC 3813 [NEGK]
76517
76431
-
Leu
CAA
[ENA]
¡û
>W1712018269
NEXX01000001
Gammaproteobacteria
Acinetobacter populi [NEXX]
821906
821820
-
Leu
CAA
[ENA]
¡û
>W1712084379
NHRM01000008
Gammaproteobacteria
Acinetobacter wuhouensis WCHA62 [NHRM]
93530
93616
+
Leu
CAA
[ENA]
¡û
>C171040258
CP015615
Gammaproteobacteria
Acinetobacter schindleri ACE [CP015615]
2429993
2429907
-
Leu
CAA
-
¡û
>W131038055
AMFQ01000090
Gammaproteobacteria
Acinetobacter sp. WC-743 [AMFQ]
89331
89245
-
Leu
CAA
[ENA]
¡û
>W131042525
AMJK01000083
Gammaproteobacteria
Acinetobacter schindleri TG19614 [AMJK]
6638
6552
-
Leu
CAA
[ENA]
¡û
>W131113635
APOS01000030
Gammaproteobacteria
Acinetobacter guillouiae CIP 63.46 [APOS]
1561184
1561098
-
Leu
CAA
[ENA]
¡û
>W131114682
APPI01000019
Gammaproteobacteria
Acinetobacter schindleri NIPH 900 [APPI]
50730
50816
+
Leu
CAA
[ENA]
¡û
>W131114737
APPJ01000009
Gammaproteobacteria
Acinetobacter guillouiae NIPH 991 [APPJ]
670000
670086
+
Leu
CAA
[ENA]
¡û
>W131114780
APPK01000011
Gammaproteobacteria
Acinetobacter bereziniae NIPH 3 [APPK]
118066
118152
+
Leu
CAA
[ENA]
¡û
>W131115036
APPN01000080
Gammaproteobacteria
Acinetobacter gerneri DSM 14967 = CIP 107464 [APPN]
135109
135023
-
Leu
CAA
[ENA]
¡û
>W131115197
APPQ01000020
Gammaproteobacteria
Acinetobacter schindleri CIP 107287 [APPQ]
51191
51277
+
Leu
CAA
[ENA]
¡û
>W131115929
APQA01000024
Gammaproteobacteria
Acinetobacter ursingii DSM 16037 = CIP 107286 [APQA]
161869
161955
+
Leu
CAA
[ENA]
¡û
>W131115959
APQB01000015
Gammaproteobacteria
Acinetobacter ursingii NIPH 706 [APQB]
116549
116463
-
Leu
CAA
[ENA]
¡û
>W131116038
APQC01000006
Gammaproteobacteria
Acinetobacter ursingii ANC 3649 [APQC]
157598
157684
+
Leu
CAA
[ENA]
¡û
>W131116143
APQD01000021
Gammaproteobacteria
Acinetobacter bouvetii DSM 14964 = CIP 107468 [APQD]
96705
96791
+
Leu
CAA
[ENA]
¡û
>W131116305
APQG01000019
Gammaproteobacteria
Acinetobacter bereziniae CIP 70.12 [APQG]
382719
382633
-
Leu
CAA
[ENA]
¡û
>W131118877
APRQ01000036
Gammaproteobacteria
Acinetobacter sp. CIP 101934 [APRQ]
14189
14103
-
Leu
CAA
[ENA]
¡û
>W131169085
AREL01000009
Gammaproteobacteria
Acinetobacter bouvetii DSM 14964 = CIP 107468 [AREL]
79187
79101
-
Leu
CAA
[ENA]
¡û
>W131193944
ASQG01000039
Gammaproteobacteria
Acinetobacter guillouiae MSP4-18 [ASQG]
90753
90839
+
Leu
CAA
[ENA]
¡û
>W131203445
ASYY01000048
Gammaproteobacteria
Acinetobacter gerneri MTCC 9824 [ASYY]
21738
21652
-
Leu
CAA
[ENA]
¡û
>WENV181206944
OFAX01004453
[OFAX] metagenome; hydrothermal vent
483
569
+
Leu
CAA
[ENA]
¢þ
>WENV181731075
OGQD01000010
[OGQD] human gut metagenome; faeces
85381
85467
+
Leu
CAA
[ENA]
¢þ
>W141238515
BBLI01000061
Gammaproteobacteria
Acinetobacter gerneri [BBLI]
21691
21605
-
Leu
CAA
[ENA]
¡û
>W141238528
BBLJ01000003
Gammaproteobacteria
Acinetobacter bereziniae [BBLJ]
145566
145480
-
Leu
CAA
[ENA]
¡û
>WENV170022602
BCQK01025506
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
643
729
+
Leu
CAA
[ENA]
¢þ
>W141449392
JEZN01000020
Gammaproteobacteria
Acinetobacter sp. 479375 479375 [JEZN]
40428
40514
+
Leu
CAA
[ENA]
¡û
>WENV170735202
LULL01000241
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
25382
25468
+
Leu
CAA
[ENA]
¢þ
>WENV170738454
LULP01000330
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
35279
35365
+
Leu
CAA
[ENA]
¢þ
>WENV170745575
LULY01014945
[LULY] marine metagenome; Red Sea water column Station 91 - depth 200m
325
411
+
Leu
CAA
[ENA]
¢þ
>WENV170759900
LUMT01000968
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
12477
12563
+
Leu
CAA
[ENA]
¢þ
>WENV170761366
LUMV01000064
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
40561
40647
+
Leu
CAA
[ENA]
¢þ
>C181030790
CP018259
Gammaproteobacteria
Acinetobacter bereziniae XH901 [CP018259]
792012
792098
+
Leu
CAA
-
¡û
>C181092919
CP024011
Gammaproteobacteria
Acinetobacter sp. LoGeW2-3 [CP024011]
508490
508404
-
Leu
CAA
-
¡û
>C181120816
CP025618
Gammaproteobacteria
Acinetobacter schindleri SGAir0122 [CP025618]
861062
860976
-
Leu
CAA
-
¡û
>C181178069
CP029397
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [CP029397]
656978
656892
-
Leu
CAA
-
¡û
>C191000121
AP014630
Gammaproteobacteria
Acinetobacter guillouiae NBRC 110550 [AP014630]
658028
658114
+
Leu
CAA
-
¡û
>C191005611
AP018824
Gammaproteobacteria
Acinetobacter ursingii M3 [AP018824]
369223
369137
-
Leu
CAA
-
¡û
>C191078933
CP031716
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [CP031716]
640091
640177
+
Leu
CAA
-
¡û
>C191101034
CP033133
Gammaproteobacteria
Acinetobacter wuhouensis WCHAW010062 [CP033133]
680504
680590
+
Leu
CAA
-
¡û
>W141566713
JICM01000001
Gammaproteobacteria
Acinetobacter sp. ETR1 [JICM]
119960
120046
+
Leu
CAA
[ENA]
¡û
>W1910637775
LQXQ01000011
Gammaproteobacteria
Acinetobacter sp. CFCC 10889 [LQXQ]
80068
79982
-
Leu
CAA
[ENA]
¡û
>W1910921937
NIFO01000006
Gammaproteobacteria
Acinetobacter piscicola LW15 [NIFO]
87390
87476
+
Leu
CAA
[ENA]
¡û
>W1911490765
OANT01000001
Gammaproteobacteria
Acinetobacter puyangensis ANC 4466 [OANT]
303332
303418
+
Leu
CAA
[ENA]
¡û
>W1911541188
OOGT01000035
Gammaproteobacteria
Acinetobacter stercoris KPC-SM-21 [OOGT]
1862
1776
-
Leu
CAA
[ENA]
¡û
>W1911568901
PCQO01000002
Gammaproteobacteria
Acinetobacter sp. MYb10 [PCQO]
637528
637442
-
Leu
CAA
[ENA]
¡û
>W1911621258
PQLO01000018
Gammaproteobacteria
Acinetobacter sp. ACNIH4 [PQLO]
10022
9936
-
Leu
CAA
[ENA]
¡û
>W1911621332
PQLP01000019
Gammaproteobacteria
Acinetobacter sp. ACNIH3 [PQLP]
10022
9936
-
Leu
CAA
[ENA]
¡û
>W1911749119
QWFV01000108
Gammaproteobacteria
Acinetobacter bereziniae 374/14 [QWFV]
59200
59286
+
Leu
CAA
[ENA]
¡û
>W1810043810
BHGA01000077
Gammaproteobacteria
Acinetobacter ursingii OCU_Ac4 [BHGA]
745
831
+
Leu
CAA
[ENA]
¡û
>W1810304607
PTPV01000019
Gammaproteobacteria
Acinetobacter ursingii blaTEM-116 [PTPV]
29876
29790
-
Leu
CAA
[ENA]
¡û
>W1810530690
QCWW01000015
Gammaproteobacteria
Acinetobacter schindleri DRN [QCWW]
48771
48857
+
Leu
CAA
[ENA]
¡û
>W1810698803
QMBM01000001
Gammaproteobacteria
Acinetobacter sp. SM1B [QMBM]
418351
418437
+
Leu
CAA
[ENA]
¡û
>W1510016010
BBRY01000001
Gammaproteobacteria
Acinetobacter guillouiae KCTC 23200 [BBRY]
90275
90361
+
Leu
CAA
[ENA]
¡û
>W1510017985
BBTT01000004
Gammaproteobacteria
Acinetobacter ursingii NBRC 110511 [BBTT]
158462
158548
+
Leu
CAA
[ENA]
¡û
>W1510018404
BBUB01000004
Gammaproteobacteria
Acinetobacter ursingii NBRC 110512 [BBUB]
158462
158548
+
Leu
CAA
[ENA]
¡û
>W1510018455
BBUC01000004
Gammaproteobacteria
Acinetobacter ursingii NBRC 110605 [BBUC]
158468
158554
+
Leu
CAA
[ENA]
¡û
>W1510069447
CDEL01000271
Gammaproteobacteria
Acinetobacter bereziniae CHI-40-1 [CDEL]
74571
74485
-
Leu
CAA
[ENA]
¡û
>W1511452646
JVEK01000063
Gammaproteobacteria
Acinetobacter bereziniae 507_ABAU [JVEK]
107136
107222
+
Leu
CAA
[ENA]
¡û
>W1511456694
JVHT01000018
Gammaproteobacteria
Acinetobacter ursingii 421_ABAU [JVHT]
154783
154869
+
Leu
CAA
[ENA]
¡û
>W1511595654
LBNA01000058
Gammaproteobacteria
Acinetobacter sp. Ag2 [LBNA]
141936
142022
+
Leu
CAA
[ENA]
¡û
>W1511686383
LFRE01000062
Gammaproteobacteria
Acinetobacter sp. VT 511 [LFRE]
43690
43604
-
Leu
CAA
[ENA]
¡û
>W11163717
AFIE01000006
Gammaproteobacteria
Acinetobacter sp. P8-3-8 [AFIE]
67638
67552
-
Leu
CAA
[ENA]
¡û
>W1610060990
BCMB01000014
Gammaproteobacteria
Acinetobacter bouvetii [BCMB]
91613
91699
+
Leu
CAA
[ENA]
¡û
>W1610061023
BCMC01000005
Gammaproteobacteria
Acinetobacter ursingii [BCMC]
156216
156302
+
Leu
CAA
[ENA]
¡û
>W1610061101
BCMD01000025
Gammaproteobacteria
Acinetobacter schindleri [BCMD]
6585
6499
-
Leu
CAA
[ENA]
¡û
>W121046910
AIEA01000002
Gammaproteobacteria
Acinetobacter ursingii DSM 16037 = CIP 107286 [AIEA]
156473
156559
+
Leu
CAA
[ENA]
¡û
>W121047388
AIEI01000001
Gammaproteobacteria
Acinetobacter bereziniae LMG 1003 [AIEI]
110993
110907
-
Leu
CAA
[ENA]
¡û
>W121070543
AJXD01000031
Gammaproteobacteria
Acinetobacter sp. HA [AJXD]
50224
50310
+
Leu
CAA
[ENA]
¡û
>W121070544
AJXD01000031
Gammaproteobacteria
Acinetobacter sp. HA [AJXD]
50669
50583
-
Leu
CAA
[ENA]
¡û
>W1610672097
LKDJ01000001
Gammaproteobacteria
Acinetobacter bereziniae [LKDJ]
137246
137332
+
Leu
CAA
[ENA]
¡û
>W1610724480
LMED01000012
Gammaproteobacteria
Acinetobacter sp. Root1280 [LMED]
489906
489820
-
Leu
CAA
[ENA]
¡û
>W1610927507
LUAW01000024
Gammaproteobacteria
Acinetobacter pragensis ANC 4149 [LUAW]
70861
70947
+
Leu
CAA
[ENA]
¡û
>W1610937416
LUOQ01000087
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S29_B6 [LUOQ]
35279
35365
+
Leu
CAA
[ENA]
¡û
>W1610937581
LUOV01000047
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S44_B2 [LUOV]
40561
40647
+
Leu
CAA
[ENA]
¡û
>W1611065618
MBPR01000298
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
85724
85810
+
Leu
CAA
[ENA]
¡û
>W1710058286
BCMB01000014
Gammaproteobacteria
Acinetobacter bouvetii [BCMB]
91613
91699
+
Leu
CAA
[ENA]
¡û
>W1710058319
BCMC01000005
Gammaproteobacteria
Acinetobacter ursingii [BCMC]
156216
156302
+
Leu
CAA
[ENA]
¡û
>W1710058397
BCMD01000025
Gammaproteobacteria
Acinetobacter schindleri [BCMD]
6585
6499
-
Leu
CAA
[ENA]
¡û
>W1710511085
FMYL01000001
Gammaproteobacteria
Acinetobacter boissieri [FMYL]
40134
40048
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK