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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73544 (68 seq.)
>W131037609
AMFF01000292
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMFF]
1317
1231
-
Leu
TAA
[ENA]
¡û
>W131038472
AMGC01000312
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
14525
14611
+
Leu
TAA
[ENA]
¡û
>W1711124954
LUKY01000032
Gammaproteobacteria
Candidatus Rickettsiella isopodorum [LUKY]
130790
130704
-
Leu
TAA
[ENA]
¡û
>W1711138271
LVCQ01000065
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
13280
13366
+
Leu
TAA
[ENA]
¡û
>W1711138273
LVCQ01000065
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
13478
13564
+
Leu
TAA
[ENA]
¡û
>W131195190
ASSK01000176
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
1381
1295
-
Leu
TAA
[ENA]
¡û
>W131184827
ARTF01000020
Gammaproteobacteria
gamma proteobacterium SCGC AAA160-D02 [ARTF]
3486
3572
+
Leu
TAA
[ENA]
¡û
>C171026490
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
1927234
1927320
+
Leu
TAA
-
¡û
>C171026492
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
1927432
1927518
+
Leu
TAA
-
¡û
>C171026546
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
2057857
2057943
+
Leu
TAA
-
¡û
>C171026548
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
2058055
2058141
+
Leu
TAA
-
¡û
>C171026595
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
2910965
2911051
+
Leu
TAA
-
¡û
>C171026597
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
2911163
2911249
+
Leu
TAA
-
¡û
>C171026651
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
2908183
2908269
+
Leu
TAA
-
¡û
>C171026653
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
2908381
2908467
+
Leu
TAA
-
¡û
>C171026707
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
2815171
2815257
+
Leu
TAA
-
¡û
>C171026709
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
2815369
2815455
+
Leu
TAA
-
¡û
>C171026764
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
2796464
2796550
+
Leu
TAA
-
¡û
>C171026766
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
2796662
2796748
+
Leu
TAA
-
¡û
>C171026820
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
2797086
2797172
+
Leu
TAA
-
¡û
>C171026822
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
2797284
2797370
+
Leu
TAA
-
¡û
>C171026859
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
263795
263881
+
Leu
TAA
-
¡û
>C171026861
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
263993
264079
+
Leu
TAA
-
¡û
>C171026946
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
3116312
3116226
-
Leu
TAA
-
¡û
>C171026948
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
3116114
3116028
-
Leu
TAA
-
¡û
>C171026979
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
817786
817872
+
Leu
TAA
-
¡û
>C171026981
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
817984
818070
+
Leu
TAA
-
¡û
>C171027044
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
2796564
2796650
+
Leu
TAA
-
¡û
>C171027046
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
2796762
2796848
+
Leu
TAA
-
¡û
>C171027083
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
263794
263880
+
Leu
TAA
-
¡û
>C171027085
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
263992
264078
+
Leu
TAA
-
¡û
>C171027139
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
263794
263880
+
Leu
TAA
-
¡û
>C171027141
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
263992
264078
+
Leu
TAA
-
¡û
>C171027203
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
818076
818162
+
Leu
TAA
-
¡û
>C171027205
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
818274
818360
+
Leu
TAA
-
¡û
>WENV181316085
OFJS01007227
[OFJS] marine metagenome; sea ice
266
352
+
Leu
TAA
[ENA]
¢þ
>W141221217
AZYQ02000175
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
2860
2774
-
Leu
TAA
[ENA]
¡û
>W141221226
AZYQ02000202
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
38473
38559
+
Leu
TAA
[ENA]
¡û
>W141221228
AZYQ02000202
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
38671
38757
+
Leu
TAA
[ENA]
¡û
>WENV183713323
PDWI01134232
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1737
1651
-
Leu
TAA
[ENA]
¢þ
>WENV170530517
CEWK01027613
[CEWK] marine metagenome genome assembly TARA_132_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
480
566
+
Leu
TAA
[ENA]
¢þ
>WENV170825869
MDSY01101345
[MDSY] marine metagenome; seawater
13434
13520
+
Leu
TAA
[ENA]
¢þ
>C191116622
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
845365
845451
+
Leu
TAA
-
¡û
>C191116624
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
845563
845649
+
Leu
TAA
-
¡û
>W1911652751
QBEV01000313
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
1971
1885
-
Leu
TAA
[ENA]
¡û
>W1810054385
PDFD01000099
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
1671
1585
-
Leu
TAA
[ENA]
¡û
>W1810054387
PDFD01000099
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
1473
1387
-
Leu
TAA
[ENA]
¡û
>W1810596802
QGGU01000003
Gammaproteobacteria
Pleionea mediterranea DSM 25350 [QGGU]
105781
105695
-
Leu
TAA
[ENA]
¡û
>C151086980
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
1256561
1256647
+
Leu
TAA
[Ensembl]
¡û
>C151086982
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
1256759
1256845
+
Leu
TAA
[Ensembl]
¡û
>C151095289
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
817785
817871
+
Leu
TAA
-
¡û
>C151095291
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
817983
818069
+
Leu
TAA
-
¡û
>W1511336300
JRAD02000019
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
38475
38561
+
Leu
TAA
[ENA]
¡û
>W1511336302
JRAD02000019
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
38673
38759
+
Leu
TAA
[ENA]
¡û
>W1511337029
JRAV02000021
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
34973
35059
+
Leu
TAA
[ENA]
¡û
>W1511337031
JRAV02000021
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
35171
35257
+
Leu
TAA
[ENA]
¡û
>W1511346426
JRHD01000096
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
3573
3659
+
Leu
TAA
[ENA]
¡û
>W1511346880
JRHP01000117
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
3574
3660
+
Leu
TAA
[ENA]
¡û
>W1511657172
LELB01000166
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
38859
38945
+
Leu
TAA
[ENA]
¡û
>W1511657174
LELB01000166
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
39057
39143
+
Leu
TAA
[ENA]
¡û
>C161042023
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
796022
796108
+
Leu
TAA
[Ensembl]
¡û
>C161042025
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
796220
796306
+
Leu
TAA
[Ensembl]
¡û
>C161062464
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
817967
818053
+
Leu
TAA
-
¡û
>C161062466
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
818165
818251
+
Leu
TAA
-
¡û
>C161063131
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
818067
818153
+
Leu
TAA
-
¡û
>C161063133
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
818265
818351
+
Leu
TAA
-
¡û
>W1610949357
LVCQ01000065
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
13280
13366
+
Leu
TAA
[ENA]
¡û
>W1610949359
LVCQ01000065
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
13478
13564
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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