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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73558 (34 seq.)
>W1710864962
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
184058
183972
-
Leu
CAG
[ENA]
¡û
>W1711220372
LXQJ01000053
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
16026
16112
+
Leu
CAG
[ENA]
¡û
>W1711751445
MUNT01000006
Gammaproteobacteria
Rhodanobacter sp. C03 [MUNT]
569992
570078
+
Leu
CAG
[ENA]
¡û
>C171050463
CP016756
Gammaproteobacteria
Stenotrophomonas nitritireducens 2001 [CP016756]
704763
704849
+
Leu
CAG
-
¡û
>C171050464
CP016756
Gammaproteobacteria
Stenotrophomonas nitritireducens 2001 [CP016756]
705205
705291
+
Leu
CAG
-
¡û
>C171050465
CP016756
Gammaproteobacteria
Stenotrophomonas nitritireducens 2001 [CP016756]
705697
705783
+
Leu
CAG
-
¡û
>W131226635
AUEN01000001
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
594130
594216
+
Leu
CAG
[ENA]
¡û
>W131235372
AULN01000015
Gammaproteobacteria
Luteimonas mephitis DSM 12574 [AULN]
110150
110236
+
Leu
CAG
[ENA]
¡û
>WENV180036139
FTLB01418263
[FTLB] metagenome; soil
358
272
-
Leu
CAG
[ENA]
¢þ
>WENV180099552
NMRC01016950
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
1281
1195
-
Leu
CAG
[ENA]
¢þ
>WENV180695335
OCZS013339464
[OCZS] soil metagenome; soil
42
128
+
Leu
CAG
[ENA]
¢þ
>WENV181401656
OFTX01002226
[OFTX] sludge metagenome; sludge
580
666
+
Leu
CAG
[ENA]
¢þ
>WENV183728178
PJTP01056497
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
147
61
-
Leu
CAG
[ENA]
¢þ
>WENV183729010
PJTQ01002237
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1124
1038
-
Leu
CAG
[ENA]
¢þ
>WENV183747901
PPFU01002411
[PPFU] hypolithon metagenome; Antarctic Hypolithon
4222
4308
+
Leu
CAG
[ENA]
¢þ
>WENV170559865
CXWL01162771
[CXWL] groundwater metagenome; biofilm material
239
153
-
Leu
CAG
[ENA]
¢þ
>WENV170708210
LNAP01059062
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
740
826
+
Leu
CAG
[ENA]
¢þ
>C181080851
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
1573298
1573212
-
Leu
CAG
-
¡û
>C181080852
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
1572568
1572482
-
Leu
CAG
-
¡û
>W1911283700
NTJF01000013
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
35288
35374
+
Leu
CAG
[ENA]
¡û
>W1911283701
NTJF01000013
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
36054
36140
+
Leu
CAG
[ENA]
¡û
>W1911283747
NTJG01000014
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
60447
60361
-
Leu
CAG
[ENA]
¡û
>W1911283748
NTJG01000014
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
59681
59595
-
Leu
CAG
[ENA]
¡û
>W1911283789
NTJH01000012
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
35289
35375
+
Leu
CAG
[ENA]
¡û
>W1911283790
NTJH01000012
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
36055
36141
+
Leu
CAG
[ENA]
¡û
>W1810914475
QVPD01000007
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
93171
93085
-
Leu
CAG
[ENA]
¡û
>W1511511133
JXSS01000043
Gammaproteobacteria
Lysobacter sp. A03 [JXSS]
6352
6266
-
Leu
CAG
[ENA]
¡û
>W11172549
AFSN01000012
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [AFSN]
149432
149518
+
Leu
CAG
[ENA]
¡û
>C121005572
CP003093
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [CP003093]
2201275
2201361
+
Leu
CAG
[Ensembl]
¡û
>W1610027247
AVPS01000003
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
121862
121776
-
Leu
CAG
[ENA]
¡û
>W1611004844
LXQJ01000053
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
16026
16112
+
Leu
CAG
[ENA]
¡û
>W1710023481
AVPS01000003
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
121862
121776
-
Leu
CAG
[ENA]
¡û
>W1710544590
FOAX01000002
Gammaproteobacteria
Pseudoxanthomonas sp. GM95 [FOAX]
1101223
1101137
-
Leu
CAG
[ENA]
¡û
>W1710601709
FUXP01000001
Gammaproteobacteria
Lysobacter spongiicola DSM 21749 [FUXP]
678337
678251
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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