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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73588 (52 seq.)
>A171001306
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
3471642
3471559
-
Ser
TGA
-
¡û
>A171003051
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
2524713
2524796
+
Ser
TGA
-
¡û
>A171003104
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
3348900
3348984
+
Ser
TGA
-
¡û
>A171003168
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
2831444
2831528
+
Ser
TGA
-
¡û
>A171003475
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1467431
1467514
+
Ser
TGA
-
¡û
>A171006924
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
3309986
3310069
+
Ser
TGA
-
¡û
>A171006951
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
812400
812484
+
Ser
TGA
-
¡û
>WENV180318955
OBKM01072695
[OBKM] metagenome; water
185
102
-
Ser
TGA
[ENA]
¢þ
>WENV181404257
OGBZ01007534
[OGBZ] sediment metagenome; hot spring sediment
701
618
-
Ser
TGA
[ENA]
¢þ
>WENV170702443
LKMJ01001960
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
11279
11362
+
Ser
TGA
[ENA]
¢þ
>WENV170703527
LKMJ01013188
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4012
4096
+
Ser
TGA
[ENA]
¢þ
>WENV170703674
LKMJ01015291
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5667
5750
+
Ser
TGA
[ENA]
¢þ
>W1910226677
FMZP01000002
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
251380
251463
+
Ser
TGA
[ENA]
¡û
>W1910227146
FNLC01000002
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
180285
180202
-
Ser
TGA
[ENA]
¡û
>W1910229312
FNWL01000001
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
245249
245166
-
Ser
TGA
[ENA]
¡û
>W1910229313
FNWL01000001
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
239222
239139
-
Ser
TGA
[ENA]
¡û
>W1910229798
FOFD01000002
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
399233
399316
+
Ser
TGA
[ENA]
¡û
>W1910229878
FOIC01000001
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
272398
272481
+
Ser
TGA
[ENA]
¡û
>W1910229933
FOIS01000002
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
224858
224941
+
Ser
TGA
[ENA]
¡û
>W1910230242
FOKW01000003
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
250492
250409
-
Ser
TGA
[ENA]
¡û
>W1910230441
FORO01000010
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
81998
81914
-
Ser
TGA
[ENA]
¡û
>W1910340492
FTNP01000001
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
239887
239803
-
Ser
TGA
[ENA]
¡û
>W1910340542
FTNR01000004
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
79907
79990
+
Ser
TGA
[ENA]
¡û
>W1910568489
JDTG01000004
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
369845
369929
+
Ser
TGA
[ENA]
¡û
>W1910569058
JHUT02000002
Euryarchaeota
Natrinema mahii H13 [JHUT]
147301
147218
-
Ser
TGA
[ENA]
¡û
>W1910572705
JNCS01000002
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
521145
521061
-
Ser
TGA
[ENA]
¡û
>W1910575902
JROF01000065
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
4851
4934
+
Ser
TGA
[ENA]
¡û
>W1910646115
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1992502
1992586
+
Ser
TGA
[ENA]
¡û
>W1910657569
MASN01000035
Euryarchaeota
Natrialba sp. SSL1 [MASN]
79293
79377
+
Ser
TGA
[ENA]
¡û
>W1911434007
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
1687178
1687094
-
Ser
TGA
[ENA]
¡û
>W1911591321
PKKI01000005
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
81928
81844
-
Ser
TGA
[ENA]
¡û
>W1610001065
ACIT01000004
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
168545
168462
-
Ser
TGA
[ENA]
¡û
>W1610004069
AGFZ01000116
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
44919
45002
+
Ser
TGA
[ENA]
¡û
>W1610004099
AGIM01000008
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
126769
126853
+
Ser
TGA
[ENA]
¡û
>W1610004134
AGIN01000008
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
38173
38256
+
Ser
TGA
[ENA]
¡û
>W1610005382
AJVG01000014
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
48228
48312
+
Ser
TGA
[ENA]
¡û
>W1610011730
AOHS01000042
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
12860
12943
+
Ser
TGA
[ENA]
¡û
>W1610012092
AOIA01000148
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
14892
14809
-
Ser
TGA
[ENA]
¡û
>W1610012132
AOIB01000021
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
131424
131341
-
Ser
TGA
[ENA]
¡û
>W1610012159
AOIC01000026
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
63184
63100
-
Ser
TGA
[ENA]
¡û
>W1610012199
AOID01000014
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
89433
89517
+
Ser
TGA
[ENA]
¡û
>W1610012252
AOIE01000073
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
19312
19395
+
Ser
TGA
[ENA]
¡û
>W1610012314
AOII01000089
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
62811
62728
-
Ser
TGA
[ENA]
¡û
>W1610012365
AOIJ01000086
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
36062
36146
+
Ser
TGA
[ENA]
¡û
>W1610012378
AOIK01000016
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
18101
18017
-
Ser
TGA
[ENA]
¡û
>W1610012492
AOIM01000041
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
343280
343196
-
Ser
TGA
[ENA]
¡û
>W1610012513
AOIN01000056
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
132080
131997
-
Ser
TGA
[ENA]
¡û
>W1610012668
AOIR01000039
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
87026
87110
+
Ser
TGA
[ENA]
¡û
>W1610012766
AOIT01000017
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
85313
85396
+
Ser
TGA
[ENA]
¡û
>W1610014433
AOLZ01000056
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
45008
45091
+
Ser
TGA
[ENA]
¡û
>W1610014452
AOMA01000031
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
5744
5661
-
Ser
TGA
[ENA]
¡û
>W1610082993
CBMA010000035
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
75540
75457
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK