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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73687 (12 seq.)
>C171016803
CP012418
Gammaproteobacteria
Kangiella sediminilitoris KCTC 23892 [CP012418]
851931
852017
+
Leu
TAA
-
¡û
>W131169965
ARFE01000002
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
1075486
1075572
+
Leu
TAA
[ENA]
¡û
>WENV183704086
PDWI01000025
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
177972
178058
+
Leu
TAA
[ENA]
¢þ
>WENV170779626
LZQQ01000450
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
5591
5677
+
Leu
TAA
[ENA]
¢þ
>C181113459
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
1693415
1693329
-
Leu
TAA
-
¡û
>C191011681
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
1645700
1645614
-
Leu
TAA
-
¡û
>C191084380
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
1259115
1259201
+
Leu
TAA
-
¡û
>W141700047
JMIU01000001
Gammaproteobacteria
Hydrogenovibrio marinus [JMIU]
359898
359984
+
Leu
TAA
[ENA]
¡û
>W141776978
JOML01000002
Gammaproteobacteria
Hydrogenovibrio marinus DSM 11271 [JOML]
722789
722875
+
Leu
TAA
[ENA]
¡û
>W1810628301
QICH01000003
Gammaproteobacteria
Kangiella spongicola ATCC BAA-2076 [QICH]
11300
11386
+
Leu
TAA
[ENA]
¡û
>C151074706
CP010975
Gammaproteobacteria
Kangiella geojedonensis YCS-5 [CP010975]
861086
861172
+
Leu
TAA
[Ensembl]
¡û
>C10108004
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
996602
996688
+
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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