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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73698 (23 seq.)
>A171000492
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1886757
1886671
-
Ser
TGA
-
¡û
>A171001855
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
102131
102217
+
Ser
TGA
-
¡û
>A171002280
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
201927
202013
+
Ser
TGA
-
¡û
>A171002657
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1187603
1187689
+
Ser
TGA
-
¡û
>A171003897
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
550272
550186
-
Ser
TGA
-
¡û
>A171004026
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
212004
212090
+
Ser
TGA
-
¡û
>A171004235
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
501044
500958
-
Ser
TGA
-
¡û
>A171004286
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1902111
1902197
+
Ser
TGA
-
¡û
>A171004441
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
961173
961259
+
Ser
TGA
-
¡û
>A171006340
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
240800
240886
+
Ser
TGA
-
¡û
>A171006455
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
122613
122699
+
Ser
TGA
-
¡û
>A171006585
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1427127
1427213
+
Ser
TGA
-
¡û
>WENV180234611
OBCS01003894
[OBCS] metagenome; diffuse fluid
149
63
-
Ser
TGA
[ENA]
¢þ
>WENV180287499
OBIK01086771
[OBIK] hydrothermal vent metagenome; sea water
131
45
-
Ser
TGA
[ENA]
¢þ
>WENV170676969
LDZS01003822
[LDZS] terrestrial metagenome; oil reservoir sample K3
242
156
-
Ser
TGA
[ENA]
¢þ
>W1910200318
FJMQ01000103
Euryarchaeota
Thermococcus litoralis [FJMQ]
70324
70238
-
Ser
TGA
[ENA]
¡û
>W1910597271
LANF01000010
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
136666
136580
-
Ser
TGA
[ENA]
¡û
>W1610000705
ABSF01000005
Euryarchaeota
Thermococcus barophilus MP [ABSF]
2295
2381
+
Ser
TGA
[ENA]
¡û
>W1610000900
ABXN01000014
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
263889
263803
-
Ser
TGA
[ENA]
¡û
>W1610004933
AHVB01000062
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
17839
17753
-
Ser
TGA
[ENA]
¡û
>W1610005301
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
16006
15920
-
Ser
TGA
[ENA]
¡û
>W1610005585
AKID01000109
Euryarchaeota
Thermococcus sp. PK [AKID]
26566
26480
-
Ser
TGA
[ENA]
¡û
>W1610005589
AKID01000110
Euryarchaeota
Thermococcus sp. PK [AKID]
229
143
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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