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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73721 (20 seq.)
>W1712104758
NIPZ01000061
Alphaproteobacteria
Paracoccus yeei [NIPZ]
9274
9188
-
Leu
GAG
[ENA]
¡û
>C171107668
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
2580095
2580181
+
Leu
GAG
-
¡û
>C171110797
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
101614
101528
-
Leu
GAG
-
¡û
>WENV183732802
PJTX01016110
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
308
394
+
Leu
GAG
[ENA]
¢þ
>WENV183734548
PJTZ01016856
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
304
218
-
Leu
GAG
[ENA]
¢þ
>WENV170571235
FLOH01000106
[FLOH] marine metagenome; water
179117
179031
-
Leu
GAG
[ENA]
¢þ
>C181099780
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
2051270
2051356
+
Leu
GAG
-
¡û
>C181190829
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
2561637
2561723
+
Leu
GAG
-
¡û
>C181194162
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
1010638
1010724
+
Leu
GAG
-
¡û
>C191073568
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
694449
694535
+
Leu
GAG
-
¡û
>W141558856
JHWH01000002
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
297076
296990
-
Leu
GAG
[ENA]
¡û
>C141006344
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
2512751
2512665
-
Leu
GAG
[Ensembl]
¡û
>W1911245324
NSJZ01000003
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
233188
233274
+
Leu
GAG
[ENA]
¡û
>W1810697129
QLUV01000009
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
37850
37764
-
Leu
GAG
[ENA]
¡û
>W1511348765
JRKS01000001
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
112103
112189
+
Leu
GAG
[ENA]
¡û
>W11157645
AFCF01000068
Alphaproteobacteria
Leisingera sp. ANG1 ANG1 [AFCF]
82944
83030
+
Leu
GAG
[ENA]
¡û
>W1710508072
FMVT01000001
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
181485
181571
+
Leu
GAG
[ENA]
¡û
>W1710521184
FNGE01000008
Alphaproteobacteria
Paracoccus chinensis [FNGE]
20234
20148
-
Leu
GAG
[ENA]
¡û
>W1710540942
FNXG01000002
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
600916
601002
+
Leu
GAG
[ENA]
¡û
>W1710592369
FRCK01000002
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
96367
96281
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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