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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73739 (26 seq.)
>W1710877132
LMPV01000005
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
583
669
+
Leu
TAA
[ENA]
¡û
>W1711116972
LUCU01000005
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
613
527
-
Leu
TAA
[ENA]
¡û
>W1711603281
MOLV01000034
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
402
316
-
Leu
TAA
[ENA]
¡û
>W1712017342
NESR01000043
Bacillota
Kurthia gibsonii [NESR]
512
426
-
Leu
TAA
[ENA]
¡û
>PL171001642
CP022237
Firmicutes
Exiguobacterium oxidotolerans N4-1P plasmid:unnamed1
128532
128618
+
Leu
TAA
[ENA]
¡û
>C171040533
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
514380
514466
+
Leu
TAA
-
¡û
>C171072108
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
87246
87332
+
Leu
TAA
-
¡û
>C171072114
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
92848
92934
+
Leu
TAA
-
¡û
>w003687
AADW02000030
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
19851
19763
-
Leu
TAA
[ENA]
¡û
>C08004787
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
87570
87656
+
Leu
TAA
[Ensembl]
¡û
>WENV170022761
BCQK01046195
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
385
299
-
Leu
TAA
[ENA]
¢þ
>W141484777
JFYW01000006
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
136
222
+
Leu
TAA
[ENA]
¡û
>W141701507
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1492318
1492404
+
Leu
TAA
[ENA]
¡û
>W141730946
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2806906
2806992
+
Leu
TAA
[ENA]
¡û
>W141730996
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1653115
1653201
+
Leu
TAA
[ENA]
¡û
>C141009919
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
51719
51805
+
Leu
TAA
[Ensembl]
¡û
>W1911770711
QXJB01000022
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
238
324
+
Leu
TAA
[ENA]
¡û
>W1810760572
QPKF01000021
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
235
321
+
Leu
TAA
[ENA]
¡û
>W1511403819
JTLL01000036
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
306
392
+
Leu
TAA
[ENA]
¡û
>W1511686109
LFQN01000049
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
404
318
-
Leu
TAA
[ENA]
¡û
>W1511699969
LGIW01000010
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
346
432
+
Leu
TAA
[ENA]
¡û
>C131001803
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
87501
87587
+
Leu
TAA
[Ensembl]
¡û
>W1610589711
LDQW01000108
Bacillota
Exiguobacterium indicum [LDQW]
402
316
-
Leu
TAA
[ENA]
¡û
>W1610739478
LMPV01000005
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
583
669
+
Leu
TAA
[ENA]
¡û
>W1610928331
LUCU01000005
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
613
527
-
Leu
TAA
[ENA]
¡û
>W1710708991
LDQW01000108
Bacillota
Exiguobacterium indicum [LDQW]
402
316
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK