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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73741 (54 seq.)
>W1711009053
LQQL01000376
Bacillota
Weissella sp. DD23 [LQQL]
4486
4571
+
Leu
AAG
[ENA]
¡û
>W1711168465
LVYB01000007
Bacillota
Weissella cibaria [LVYB]
101623
101538
-
Leu
AAG
[ENA]
¡û
>W1711572579
MNBZ01000004
Bacillota
Weissella confusa [MNBZ]
12665
12750
+
Leu
AAG
[ENA]
¡û
>W1711999927
NDXJ01000020
Bacillota
Weissella cibaria [NDXJ]
9693
9778
+
Leu
AAG
[ENA]
¡û
>C171026234
CP013726
Bacillota
Weissella cibaria CMS2 [CP013726]
2327148
2327063
-
Leu
AAG
-
¡û
>C171029836
CP013934
Bacillota
Weissella cibaria CMS3 [CP013934]
1866502
1866417
-
Leu
AAG
-
¡û
>C171029922
CP013936
Bacillota
Weissella cibaria CMU [CP013936]
1876984
1876899
-
Leu
AAG
-
¡û
>W141240379
CAGH01000015
Bacillota
Weissella confusa LBAE C39-2 [CAGH]
48349
48264
-
Leu
AAG
[ENA]
¡û
>WENV183789099
PPYF01378848
[PPYF] human gut metagenome; stool from patient with Crohn's disease
642
727
+
Leu
AAG
[ENA]
¢þ
>WENV170002171
AGFT01135075
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
116
30
-
Leu
AAG
[ENA]
¢þ
>C181047640
CP020928
Bacillota
Weissella cibaria M2 [CP020928]
500353
500438
+
Leu
AAG
-
¡û
>C181069757
CP022606
Bacillota
Weissella cibaria CMS1 [CP022606]
2205484
2205569
+
Leu
AAG
-
¡û
>C181152898
CP027427
Bacillota
Weissella cibaria BM2 [CP027427]
1118007
1117922
-
Leu
AAG
-
¡û
>C191051667
CP027563
Bacillota
Weissella confusa VTT E-133279 [CP027563]
1780390
1780305
-
Leu
AAG
-
¡û
>C191051752
CP027565
Bacillota
Weissella confusa VTT E-90392 [CP027565]
1891307
1891222
-
Leu
AAG
-
¡û
>C191137852
CP035267
Bacillota
Weissella cibaria SRCM103448 [CP035267]
494454
494539
+
Leu
AAG
-
¡û
>C191188458
CP041193
Bacillota
Weissella cibaria CBA3612 [CP041193]
1964805
1964890
+
Leu
AAG
-
¡û
>W1910178104
BJEF01000007
Bacillota
Weissella cibaria JCM 12495 [BJEF]
9593
9678
+
Leu
AAG
[ENA]
¡û
>W1910401481
FUWE01000054
Bacillota
Weissella confusa AB3E41 [FUWE]
9033
9118
+
Leu
AAG
[ENA]
¡û
>W1910638434
LRRC01000014
Bacillota
Weissella cibaria 110 [LRRC]
238529
238444
-
Leu
AAG
[ENA]
¡û
>W1911634720
PVRY01000019
Bacillota
Weissella confusa CCUG 61560 [PVRY]
251
166
-
Leu
AAG
[ENA]
¡û
>W1911634794
PVRZ01000023
Bacillota
Weissella confusa CCUG 51220 [PVRZ]
38000
37915
-
Leu
AAG
[ENA]
¡û
>W1911634871
PVSA01000021
Bacillota
Weissella confusa CCUG 39518 [PVSA]
45317
45232
-
Leu
AAG
[ENA]
¡û
>W1911634951
PVSB01000024
Bacillota
Weissella confusa CCUG 37938 [PVSB]
251
166
-
Leu
AAG
[ENA]
¡û
>W1911635024
PVSC01000013
Bacillota
Weissella confusa CCUG 36556 [PVSC]
43226
43141
-
Leu
AAG
[ENA]
¡û
>W1911635086
PVSD01000017
Bacillota
Weissella confusa CCUG 30969 [PVSD]
45612
45527
-
Leu
AAG
[ENA]
¡û
>W1911635179
PVSE01000023
Bacillota
Weissella confusa F71 [PVSE]
114636
114551
-
Leu
AAG
[ENA]
¡û
>W1911635256
PVSF01000015
Bacillota
Weissella confusa EJ61 [PVSF]
37982
37897
-
Leu
AAG
[ENA]
¡û
>W1911635335
PVSG01000022
Bacillota
Weissella confusa EJ52 [PVSG]
114516
114431
-
Leu
AAG
[ENA]
¡û
>W1911635413
PVSH01000027
Bacillota
Weissella confusa EJ12 [PVSH]
113211
113126
-
Leu
AAG
[ENA]
¡û
>W1911635493
PVSI01000038
Bacillota
Weissella confusa VTT E-163496 [PVSI]
251
166
-
Leu
AAG
[ENA]
¡û
>W1911635571
PVSJ01000008
Bacillota
Weissella confusa VTT E-153460 [PVSJ]
112292
112207
-
Leu
AAG
[ENA]
¡û
>W1911635633
PVSK01000023
Bacillota
Weissella confusa VTT E-153457 [PVSK]
114927
114842
-
Leu
AAG
[ENA]
¡û
>W1911635727
PVSL01000005
Bacillota
Weissella confusa VTT E-143403 [PVSL]
167911
167826
-
Leu
AAG
[ENA]
¡û
>W1911635804
PVSM01000015
Bacillota
Weissella confusa VTT E-072748 [PVSM]
168224
168139
-
Leu
AAG
[ENA]
¡û
>W1911635883
PVSN01000063
Bacillota
Weissella confusa VTT E-062653 [PVSN]
21548
21463
-
Leu
AAG
[ENA]
¡û
>W1911635959
PVSO01000053
Bacillota
Weissella confusa VTT E-95616 [PVSO]
32182
32097
-
Leu
AAG
[ENA]
¡û
>W1911636038
PVSP01000018
Bacillota
Weissella confusa VTT E-90393 [PVSP]
170933
170848
-
Leu
AAG
[ENA]
¡û
>W1810576413
QENM01000013
Bacillota
Weissella confusa 32 [QENM]
8955
9040
+
Leu
AAG
[ENA]
¡û
>W1810816534
QSBT01000021
Bacillota
Weissella confusa AF03-13 [QSBT]
182
97
-
Leu
AAG
[ENA]
¡û
>W1810828856
QSKQ01000006
Bacillota
Weissella cibaria AM27-24 [QSKQ]
9478
9563
+
Leu
AAG
[ENA]
¡û
>W1810828913
QSKR01000005
Bacillota
Weissella cibaria AM27-22LB [QSKR]
227049
226964
-
Leu
AAG
[ENA]
¡û
>W1810842400
QSVX01000020
Bacillota
Weissella cibaria OF06-4 [QSVX]
7154
7069
-
Leu
AAG
[ENA]
¡û
>WENV11102243
AGFT01135075
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
116
30
-
Leu
AAG
[ENA]
¡û
>W1510500341
CRHY01000028
Bacillota
Streptococcus pneumoniae SMRU1312 [CRHY]
8907
8992
+
Leu
AAG
[ENA]
¡û
>W1511479008
JWHT01000033
Bacillota
Weissella cibaria AB3b [JWHT]
35460
35375
-
Leu
AAG
[ENA]
¡û
>W1511479075
JWHU01000026
Bacillota
Weissella cibaria MG1 [JWHU]
10554
10469
-
Leu
AAG
[ENA]
¡û
>W1511479148
JWHV01000021
Bacillota
Weissella cibaria ff3PR [JWHV]
25376
25291
-
Leu
AAG
[ENA]
¡û
>W11140018
AEKT01000047
Bacillota
Weissella cibaria KACC 11862 [AEKT]
9459
9544
+
Leu
AAG
[ENA]
¡û
>C161046788
CP012873
Bacillota
Weissella cibaria CH2 [CP012873]
2418279
2418194
-
Leu
AAG
[Ensembl]
¡û
>W1610528131
JQAY01000005
Bacillota
Weissella confusa [JQAY]
8862
8947
+
Leu
AAG
[ENA]
¡û
>W1610857573
LQQL01000376
Bacillota
Weissella sp. DD23 [LQQL]
4486
4571
+
Leu
AAG
[ENA]
¡û
>W1610978317
LVYB01000007
Bacillota
Weissella cibaria [LVYB]
101623
101538
-
Leu
AAG
[ENA]
¡û
>W1710629721
JQAY01000005
Bacillota
Weissella confusa [JQAY]
8862
8947
+
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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