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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73827 (80 seq.)
>W1711178219
LWGO01000001
Gammaproteobacteria
Halomonas caseinilytica elongata [LWGO]
564443
564357
-
Leu
CAG
[ENA]
¡û
>W1711302736
MAJD01000002
Gammaproteobacteria
Halomonas elongata [MAJD]
456911
456997
+
Leu
CAG
[ENA]
¡û
>W1711339807
MCAP01000014
Gammaproteobacteria
Salinicola sp. MIT1003 [MCAP]
10765
10679
-
Leu
CAG
[ENA]
¡û
>W1711434593
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
1491847
1491933
+
Leu
CAG
[ENA]
¡û
>W1711688880
MSDO01000094
Gammaproteobacteria
Salinicola socius [MSDO]
76
162
+
Leu
CAG
[ENA]
¡û
>W1711688889
MSDO01000122
Gammaproteobacteria
Salinicola socius [MSDO]
220
134
-
Leu
CAG
[ENA]
¡û
>W1711688961
MSDP01000085
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
462
548
+
Leu
CAG
[ENA]
¡û
>W1711750442
MUMZ01000020
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
24797
24883
+
Leu
CAG
[ENA]
¡û
>W1712082089
NHOU01000003
Gammaproteobacteria
Salinicola salarius [NHOU]
168142
168228
+
Leu
CAG
[ENA]
¡û
>C171073675
CP018139
Gammaproteobacteria
Halomonas aestuarii Hb3 [CP018139]
2441932
2441846
-
Leu
CAG
-
¡û
>C171092353
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
773467
773381
-
Leu
CAG
-
¡û
>C171092356
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
773078
772992
-
Leu
CAG
-
¡û
>W131176932
ARKK01000047
Gammaproteobacteria
Halomonas lutea DSM 23508 [ARKK]
60777
60863
+
Leu
CAG
[ENA]
¡û
>W131176934
ARKK01000047
Gammaproteobacteria
Halomonas lutea DSM 23508 [ARKK]
61016
61102
+
Leu
CAG
[ENA]
¡û
>W131176935
ARKK01000047
Gammaproteobacteria
Halomonas lutea DSM 23508 [ARKK]
61178
61264
+
Leu
CAG
[ENA]
¡û
>W141093348
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
599998
599912
-
Leu
CAG
[ENA]
¡û
>W141152703
AXCA01000013
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
9609
9695
+
Leu
CAG
[ENA]
¡û
>WENV170015160
AZIE01003173
[AZIE] marine sediment metagenome; sample MGS-MCh from oil contaminated site at the lagoon of Mar Chica, located in the north-west
198
112
-
Leu
CAG
[ENA]
¢þ
>WENV170371888
CETS01047467
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
193
107
-
Leu
CAG
[ENA]
¢þ
>WENV170487096
CEVO01025082
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4624
4710
+
Leu
CAG
[ENA]
¢þ
>WENV170679830
LFCJ01000690
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
18327
18241
-
Leu
CAG
[ENA]
¢þ
>WENV170965606
MTEU01004866
[MTEU] soil metagenome; naturally attenuated soil
79583
79669
+
Leu
CAG
[ENA]
¢þ
>WENV170965832
MTEV01006054
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
46604
46690
+
Leu
CAG
[ENA]
¢þ
>WENV170966199
MTEX01003900
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
142
56
-
Leu
CAG
[ENA]
¢þ
>C181084543
CP023559
Gammaproteobacteria
Salinicola tamaricis F01 [CP023559]
748756
748842
+
Leu
CAG
-
¡û
>W141557586
JHVH01000001
Gammaproteobacteria
Halomonas halodenitrificans DSM 735 [JHVH]
32705
32791
+
Leu
CAG
[ENA]
¡û
>W141754540
JNVT01000119
Gammaproteobacteria
Gammaproteobacteria bacterium MFB021 [JNVT]
2668
2754
+
Leu
CAG
[ENA]
¡û
>W1910183848
BJOC01000005
Gammaproteobacteria
Halomonas halmophila NBRC 15537 [BJOC]
170
84
-
Leu
CAG
[ENA]
¡û
>W1910339589
FTLE01000002
Gammaproteobacteria
Halomonas massiliensis Marseille-P2426 [FTLE]
93235
93149
-
Leu
CAG
[ENA]
¡û
>W1911245448
NSKB01000005
Gammaproteobacteria
Halomonas salipaludis WRN001 [NSKB]
467007
466921
-
Leu
CAG
[ENA]
¡û
>W1911245451
NSKB01000005
Gammaproteobacteria
Halomonas salipaludis WRN001 [NSKB]
466618
466532
-
Leu
CAG
[ENA]
¡û
>W1810062632
PDOG01000002
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
507319
507233
-
Leu
CAG
[ENA]
¡û
>W1810062667
PDOH01000001
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
59696
59782
+
Leu
CAG
[ENA]
¡û
>W1810199945
PNRE01000036
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
59059
59145
+
Leu
CAG
[ENA]
¡û
>W1810385366
PXNS01000001
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
452783
452697
-
Leu
CAG
[ENA]
¡û
>W1810385367
PXNS01000001
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
452631
452545
-
Leu
CAG
[ENA]
¡û
>W1810385427
PXNT01000003
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
290999
291085
+
Leu
CAG
[ENA]
¡û
>W1810387660
PXWD01000002
Gammaproteobacteria
Halomonas sp. ND22Bw [PXWD]
351316
351230
-
Leu
CAG
[ENA]
¡û
>W1810424642
PYUQ02000010
Gammaproteobacteria
Halomonas sp. SL1 [PYUQ]
29081
29167
+
Leu
CAG
[ENA]
¡û
>W1810425964
PYVV01000002
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
127297
127211
-
Leu
CAG
[ENA]
¡û
>W1810426071
PYVX01000001
Gammaproteobacteria
Halomonas denitrificans DSM 18045 [PYVX]
1084282
1084368
+
Leu
CAG
[ENA]
¡û
>W1810444049
PZJK01000006
Gammaproteobacteria
Salinicola sp. RZ23 [PZJK]
209229
209315
+
Leu
CAG
[ENA]
¡û
>W1810444128
PZJL01000008
Gammaproteobacteria
Salinicola sp. CR57 [PZJL]
72095
72009
-
Leu
CAG
[ENA]
¡û
>W1810444200
PZJM01000013
Gammaproteobacteria
Salinicola lusitanus CR50 [PZJM]
72211
72125
-
Leu
CAG
[ENA]
¡û
>W1810444210
PZJN01000001
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
194730
194816
+
Leu
CAG
[ENA]
¡û
>W1810444314
PZJO01000005
Gammaproteobacteria
Salinicola endophyticus CPA92 [PZJO]
78106
78020
-
Leu
CAG
[ENA]
¡û
>W1810444335
PZJP01000003
Gammaproteobacteria
Salinicola aestuarinus CPA62 [PZJP]
212428
212514
+
Leu
CAG
[ENA]
¡û
>W1810444430
PZJQ01000004
Gammaproteobacteria
Salinicola halimionae CPA60 [PZJQ]
168917
168831
-
Leu
CAG
[ENA]
¡û
>W1810444503
PZJR01000011
Gammaproteobacteria
Salinicola sp. CPA57 [PZJR]
78321
78235
-
Leu
CAG
[ENA]
¡û
>W1810444518
PZJS01000001
Gammaproteobacteria
Salinicola socius DSM 19940 [PZJS]
403909
403995
+
Leu
CAG
[ENA]
¡û
>W1810444632
PZJT01000015
Gammaproteobacteria
Salinicola salarius DSM 18044 [PZJT]
77726
77640
-
Leu
CAG
[ENA]
¡û
>W1810444686
PZJU01000024
Gammaproteobacteria
Salinicola peritrichatus JCM 18795 [PZJU]
26655
26741
+
Leu
CAG
[ENA]
¡û
>W1810444743
PZJV01000004
Gammaproteobacteria
Salinicola halophilus CECT 5903 [PZJV]
132
218
+
Leu
CAG
[ENA]
¡û
>W1810444745
PZJV01000004
Gammaproteobacteria
Salinicola halophilus CECT 5903 [PZJV]
438
524
+
Leu
CAG
[ENA]
¡û
>W1810444789
PZJW01000005
Gammaproteobacteria
Salinicola acroporae LMG 28587 [PZJW]
218547
218633
+
Leu
CAG
[ENA]
¡û
>W1810624138
QHGY01000002
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
510099
510013
-
Leu
CAG
[ENA]
¡û
>W1810673420
QJUB01000001
Gammaproteobacteria
Halomonas elongata MH25661 [QJUB]
60052
59966
-
Leu
CAG
[ENA]
¡û
>W1810695962
QLSX01000002
Gammaproteobacteria
Halomonas taeanensis USBA-857 [QLSX]
144285
144371
+
Leu
CAG
[ENA]
¡û
>W1510071594
CDGR01000103
Gammaproteobacteria
Halomonas salina B6 [CDGR]
84634
84548
-
Leu
CAG
[ENA]
¡û
>C11110098
FN869568
Gammaproteobacteria
Halomonas elongata DSM 2581 type strain: DSM 2581 [FN869568]
2968119
2968205
+
Leu
CAG
[Ensembl]
¡û
>W1511270593
JOKD01000030
Gammaproteobacteria
Halomonas salina CIFRI 1 [JOKD]
45866
45952
+
Leu
CAG
[ENA]
¡û
>W1511319655
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
1336913
1336999
+
Leu
CAG
[ENA]
¡û
>W1511500038
JXAS01000005
Gammaproteobacteria
Halomonas caseinilytica WD26 [JXAS]
91735
91649
-
Leu
CAG
[ENA]
¡û
>W1511518452
JXYB01000025
Gammaproteobacteria
Halomonas sp. S2151 [JXYB]
30963
31049
+
Leu
CAG
[ENA]
¡û
>W1511565211
LAEZ01000035
Gammaproteobacteria
Halomonas sp. HG01 [LAEZ]
108832
108918
+
Leu
CAG
[ENA]
¡û
>C161051053
CP013106
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [CP013106]
942089
942003
-
Leu
CAG
-
¡û
>W121063496
AJKS02000001
Gammaproteobacteria
Halomonas smyrnensis AAD6 [AJKS]
273461
273375
-
Leu
CAG
[ENA]
¡û
>W121123969
BAEU01000154
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
59963
60049
+
Leu
CAG
[ENA]
¡û
>W1610082142
BDEO01000007
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
62903
62989
+
Leu
CAG
[ENA]
¡û
>W1610082190
BDEP01000006
Gammaproteobacteria
Halomonas caseinilytica [BDEP]
83011
83097
+
Leu
CAG
[ENA]
¡û
>W1611053061
MAJD01000002
Gammaproteobacteria
Halomonas elongata [MAJD]
456911
456997
+
Leu
CAG
[ENA]
¡û
>W1710080915
BDEO01000007
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
62903
62989
+
Leu
CAG
[ENA]
¡û
>W1710080963
BDEP01000006
Gammaproteobacteria
Halomonas caseinilytica [BDEP]
83011
83097
+
Leu
CAG
[ENA]
¡û
>W1710516097
FNCI01000002
Gammaproteobacteria
Halomonas taeanensis [FNCI]
328182
328096
-
Leu
CAG
[ENA]
¡û
>W1710519412
FNES01000005
Gammaproteobacteria
Halomonas gudaonensis [FNES]
102353
102439
+
Leu
CAG
[ENA]
¡û
>W1710539150
FNVC01000005
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
173406
173320
-
Leu
CAG
[ENA]
¡û
>W1710544862
FOBC01000007
Gammaproteobacteria
Halomonas daqiaonensis [FOBC]
147519
147433
-
Leu
CAG
[ENA]
¡û
>W1710545737
FOBT01000001
Gammaproteobacteria
Halomonas caseinilytica [FOBT]
437978
437892
-
Leu
CAG
[ENA]
¡û
>W1710577171
FPAQ01000005
Gammaproteobacteria
Halomonas saccharevitans [FPAQ]
88664
88578
-
Leu
CAG
[ENA]
¡û
>W1710589812
FRAL01000002
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [FRAL]
437621
437535
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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