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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73857 (30 seq.)
>W1711934390
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
500884
500798
-
Leu
CAA
[ENA]
¡û
>W1712080428
NGZL01000001
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
110705
110791
+
Leu
CAA
[ENA]
¡û
>C022215
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
859877
859963
+
Leu
CAA
[Ensembl]
¡û
>C022368
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
3850274
3850188
-
Leu
CAA
[Ensembl]
¡û
>C022413
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
876962
877048
+
Leu
CAA
[Ensembl]
¡û
>C022970
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
4035261
4035175
-
Leu
CAA
[Ensembl]
¡û
>WENV180346896
OBLN01393483
[OBLN] sediment metagenome; sediment
70
156
+
Leu
CAA
[ENA]
¢þ
>W141171247
AXZL01000076
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
354363
354277
-
Leu
CAA
[ENA]
¡û
>W141227886
BALN01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
84515
84601
+
Leu
CAA
[ENA]
¡û
>WENV021064
AACY020561973
Marine microbial communities from Global Ocean Sampling (GOS)
7807
7895
+
Leu
CAA
[ENA]
>WENV021182
AACY020563659
Marine microbial communities from Global Ocean Sampling (GOS)
4380
4468
+
Leu
CAA
[ENA]
>C181057558
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4477574
4477660
+
Leu
CAA
-
¡û
>C181062983
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3903206
3903120
-
Leu
CAA
-
¡û
>C181165394
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
1821251
1821337
+
Leu
CAA
-
¡û
>W141520111
JGVI01000083
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
138150
138236
+
Leu
CAA
[ENA]
¡û
>C191205215
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
2922468
2922554
+
Leu
CAA
-
¡û
>W09104033
AALH01000014
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
18616
18702
+
Leu
CAA
[ENA]
¡û
>W09104599
AALX01000034
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
11043
11129
+
Leu
CAA
[ENA]
¡û
>W1910913793
NHRI01000015
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
9172
9086
-
Leu
CAA
[ENA]
¡û
>W1810073358
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
2228534
2228620
+
Leu
CAA
[ENA]
¡û
>W1810587731
QFLG01000011
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
41251
41165
-
Leu
CAA
[ENA]
¡û
>W1511403544
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
3980169
3980255
+
Leu
CAA
[ENA]
¡û
>WENV051928
AACY022991600
Marine microbial communities from Global Ocean Sampling (GOS)
465
377
-
Leu
CAA
[ENA]
>W121103319
AKZL01000030
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
8971
8885
-
Leu
CAA
[ENA]
¡û
>W1610072072
BCUO01000006
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
45007
44921
-
Leu
CAA
[ENA]
¡û
>W1610617859
LGYY01000146
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
55537
55623
+
Leu
CAA
[ENA]
¡û
>W1710069274
BCUO01000006
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
45007
44921
-
Leu
CAA
[ENA]
¡û
>W1710692441
JZWJ01000022
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
54258
54344
+
Leu
CAA
[ENA]
¡û
>W1710706617
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
2597856
2597942
+
Leu
CAA
[ENA]
¡û
>W1710744034
LGYY01000146
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
55537
55623
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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