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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73883 (74 seq.)
>W1710890877
LNCE01000010
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
7510
7424
-
Leu
CAA
[ENA]
¡û
>W1710892344
LNDQ01000105
Betaproteobacteria
Betaproteobacteria bacterium Ga0077523 [LNDQ]
20827
20741
-
Leu
CAA
[ENA]
¡û
>W1710924009
LOCQ01000047
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
13631
13717
+
Leu
CAA
[ENA]
¡û
>W1711033389
LRHW01000049
Betaproteobacteria
Janthinobacterium lividum [LRHW]
83799
83885
+
Leu
CAA
[ENA]
¡û
>W1711033486
LRHX01000016
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
932812
932898
+
Leu
CAA
[ENA]
¡û
>W1711033516
LRHY01000052
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
127956
128042
+
Leu
CAA
[ENA]
¡û
>W1711033567
LRHZ01000002
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
240728
240814
+
Leu
CAA
[ENA]
¡û
>W1711033678
LRIA01000117
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
1733
1647
-
Leu
CAA
[ENA]
¡û
>W1711033694
LRIB01000013
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
101501
101415
-
Leu
CAA
[ENA]
¡û
>W1711033775
LRIC01000048
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
335376
335290
-
Leu
CAA
[ENA]
¡û
>W1711033805
LRID01000044
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
147562
147648
+
Leu
CAA
[ENA]
¡û
>W1711308585
MAQB02000001
Betaproteobacteria
Janthinobacterium lividum [MAQB]
2383773
2383687
-
Leu
CAA
[ENA]
¡û
>W1711413757
MGWU01000043
Betaproteobacteria
Gallionellales bacterium RBG_16_56_9 [MGWU]
2734
2820
+
Leu
CAA
[ENA]
¡û
>W1712004431
NEGX01000004
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
304639
304725
+
Leu
CAA
[ENA]
¡û
>W1712004553
NEGY01000038
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
10300
10214
-
Leu
CAA
[ENA]
¡û
>W1712004583
NEGZ01000001
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
8643
8557
-
Leu
CAA
[ENA]
¡û
>W1712004656
NEHA01000002
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
298416
298502
+
Leu
CAA
[ENA]
¡û
>W1712004800
NEHB01000024
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
10193
10107
-
Leu
CAA
[ENA]
¡û
>C171010542
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
366510
366424
-
Leu
CAA
-
¡û
>C171094994
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
5917744
5917830
+
Leu
CAA
-
¡û
>W131106714
APFF01000030
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
791876
791962
+
Leu
CAA
[ENA]
¡û
>WENV180024866
FTIJ01255362
[FTIJ] metagenome; soil
155
69
-
Leu
CAA
[ENA]
¢þ
>WENV180033720
FTKL01040757
[FTKL] metagenome; soil
830
744
-
Leu
CAA
[ENA]
¢þ
>WENV180249128
OBEQ010171068
[OBEQ] groundwater metagenome; groundwater
6196
6282
+
Leu
CAA
[ENA]
¢þ
>WENV170558758
CXWL01088436
[CXWL] groundwater metagenome; biofilm material
392
478
+
Leu
CAA
[ENA]
¢þ
>WENV170559074
CXWL01108958
[CXWL] groundwater metagenome; biofilm material
41480
41394
-
Leu
CAA
[ENA]
¢þ
>WENV170559415
CXWL01122638
[CXWL] groundwater metagenome; biofilm material
3301
3215
-
Leu
CAA
[ENA]
¢þ
>WENV170709962
LNFM01000990
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7176
7262
+
Leu
CAA
[ENA]
¢þ
>WENV170714152
LNFM01057492
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1708
1622
-
Leu
CAA
[ENA]
¢þ
>WENV170714423
LNFM01072870
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1958
1872
-
Leu
CAA
[ENA]
¢þ
>WENV170714757
LNFM01098637
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1297
1383
+
Leu
CAA
[ENA]
¢þ
>W141484434
JFYR01000001
Betaproteobacteria
Janthinobacterium lividum [JFYR]
358099
358013
-
Leu
CAA
[ENA]
¡û
>C181081131
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
5908158
5908244
+
Leu
CAA
-
¡û
>C181102714
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
2563704
2563618
-
Leu
CAA
-
¡û
>C191098127
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
5246073
5246159
+
Leu
CAA
-
¡û
>C191188132
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
3535140
3535226
+
Leu
CAA
-
¡û
>W141821504
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
3589344
3589430
+
Leu
CAA
[ENA]
¡û
>W1910942528
NJGY01000001
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
1773825
1773911
+
Leu
CAA
[ENA]
¡û
>W1911199834
NRDQ01000007
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
8163
8077
-
Leu
CAA
[ENA]
¡û
>W1810068148
PDZI01000001
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
295020
294934
-
Leu
CAA
[ENA]
¡û
>W1810068266
PDZJ01000002
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
1017188
1017274
+
Leu
CAA
[ENA]
¡û
>W1810068350
PDZK01000002
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
478279
478365
+
Leu
CAA
[ENA]
¡û
>W1810068383
PDZL01000001
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
323529
323443
-
Leu
CAA
[ENA]
¡û
>W1810068561
PDZN01000005
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
192423
192337
-
Leu
CAA
[ENA]
¡û
>W1810068633
PDZO02000003
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
334560
334474
-
Leu
CAA
[ENA]
¡û
>W1810071308
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
3769404
3769318
-
Leu
CAA
[ENA]
¡û
>W1810072805
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
3282087
3282001
-
Leu
CAA
[ENA]
¡û
>W1810089379
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
3452328
3452414
+
Leu
CAA
[ENA]
¡û
>W1810121256
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
3059242
3059328
+
Leu
CAA
[ENA]
¡û
>W1810172800
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
3792701
3792787
+
Leu
CAA
[ENA]
¡û
>W1810387736
PXWF02000257
Betaproteobacteria
Massilia glaciei B448-2 [PXWF]
36249
36335
+
Leu
CAA
[ENA]
¡û
>W1810576793
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
5869551
5869637
+
Leu
CAA
[ENA]
¡û
>C151100198
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
660065
659979
-
Leu
CAA
[Ensembl]
¡û
>W1511355686
JRRH01000007
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
379774
379860
+
Leu
CAA
[ENA]
¡û
>W1511480680
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
900542
900456
-
Leu
CAA
[ENA]
¡û
>W1511588770
LBCO01000024
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
843914
844000
+
Leu
CAA
[ENA]
¡û
>W121031852
AHHB01000042
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
284602
284688
+
Leu
CAA
[ENA]
¡û
>W1610070512
BCTH01000124
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
10896
10810
-
Leu
CAA
[ENA]
¡û
>W1610093170
CYSS01000004
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
97408
97322
-
Leu
CAA
[ENA]
¡û
>W1610163464
FAOS01000004
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
97408
97322
-
Leu
CAA
[ENA]
¡û
>W1610751273
LNCE01000010
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
7510
7424
-
Leu
CAA
[ENA]
¡û
>W1610752610
LNDQ01000105
Betaproteobacteria
Betaproteobacteria bacterium Ga0077523 [LNDQ]
20827
20741
-
Leu
CAA
[ENA]
¡û
>W1610781655
LOCQ01000047
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
13631
13717
+
Leu
CAA
[ENA]
¡û
>W1611056277
MAQB01000065
Betaproteobacteria
Janthinobacterium lividum [MAQB]
127271
127185
-
Leu
CAA
[ENA]
¡û
>W1710067885
BCTH01000124
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
10896
10810
-
Leu
CAA
[ENA]
¡û
>W1710096378
CYSS01000004
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
97408
97322
-
Leu
CAA
[ENA]
¡û
>W1710165131
FAOS01000004
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
97408
97322
-
Leu
CAA
[ENA]
¡û
>W1710509324
FMXD01000001
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
1691352
1691438
+
Leu
CAA
[ENA]
¡û
>W1710517037
FNDA01000002
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
322239
322153
-
Leu
CAA
[ENA]
¡û
>W1710522187
FNHA01000003
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
278761
278847
+
Leu
CAA
[ENA]
¡û
>W1710556743
FOKL01000004
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
370706
370792
+
Leu
CAA
[ENA]
¡û
>W1710581719
FPKH01000004
Betaproteobacteria
Janthinobacterium lividum [FPKH]
140796
140710
-
Leu
CAA
[ENA]
¡û
>W1710596843
FTMV01000002
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
243205
243119
-
Leu
CAA
[ENA]
¡û
>W1710720616
LFKP01000003
Betaproteobacteria
Janthinobacterium lividum [LFKP]
295875
295789
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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