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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73885 (37 seq.)
>W1710934461
LOJI01000005
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
94155
94069
-
Leu
CAG
[ENA]
¡û
>W1710934509
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
448025
448111
+
Leu
CAG
[ENA]
¡û
>W1711147362
LVJO01000026
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
218025
218111
+
Leu
CAG
[ENA]
¡û
>W1711149073
LVLD01000019
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
27929
28015
+
Leu
CAG
[ENA]
¡û
>W1711149109
LVLE01000025
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
27929
28015
+
Leu
CAG
[ENA]
¡û
>W1711149143
LVLF01000013
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
168900
168986
+
Leu
CAG
[ENA]
¡û
>W1711149184
LVLG01000007
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
27925
28011
+
Leu
CAG
[ENA]
¡û
>W1711272433
LZFI01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
76658
76572
-
Leu
CAG
[ENA]
¡û
>W1711282000
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
246338
246252
-
Leu
CAG
[ENA]
¡û
>W1711282046
LZMR01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
198656
198570
-
Leu
CAG
[ENA]
¡û
>W1711301908
MAIK01000303
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
370
456
+
Leu
CAG
[ENA]
¡û
>W1711421608
MHZG01000011
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
144166
144252
+
Leu
CAG
[ENA]
¡û
>W1711932819
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
579704
579618
-
Leu
CAG
[ENA]
¡û
>W1712077028
NGUO01000009
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
96872
96786
-
Leu
CAG
[ENA]
¡û
>W1712077081
NGUP01000007
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
66082
65996
-
Leu
CAG
[ENA]
¡û
>C171035118
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1488880
1488966
+
Leu
CAG
-
¡û
>C171035156
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1507801
1507887
+
Leu
CAG
-
¡û
>C171035194
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1448203
1448289
+
Leu
CAG
-
¡û
>C017386
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1342971
1343057
+
Leu
CAG
[Ensembl]
¡û
>WENV181838815
OGVN01022601
[OGVN] freshwater metagenome; freshwater
392
478
+
Leu
CAG
[ENA]
¢þ
>WENV181843399
OGVU01012232
[OGVU] freshwater metagenome; freshwater
978
892
-
Leu
CAG
[ENA]
¢þ
>WENV170616697
FUWD012899579
[FUWD] metagenome; unknown
362
276
-
Leu
CAG
[ENA]
¢þ
>WENV170616790
FUWD012903087
[FUWD] metagenome; unknown
269
355
+
Leu
CAG
[ENA]
¢þ
>C181218879
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
1003609
1003695
+
Leu
CAG
-
¡û
>C181218912
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
713107
713193
+
Leu
CAG
-
¡û
>C181218982
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
852616
852702
+
Leu
CAG
-
¡û
>C181219071
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1293342
1293256
-
Leu
CAG
-
¡û
>W09106266
AAUC01000001
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
218656
218742
+
Leu
CAG
[ENA]
¡û
>C141003803
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
1051391
1051477
+
Leu
CAG
[Ensembl]
¡û
>W1810101992
PGTX01000001
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
268935
269021
+
Leu
CAG
[ENA]
¡û
>C151025657
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
1145829
1145915
+
Leu
CAG
[Ensembl]
¡û
>C161092400
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
755107
755021
-
Leu
CAG
[Ensembl]
¡û
>WENV058461
AACY023330062
Marine microbial communities from Global Ocean Sampling (GOS)
1537
1449
-
Leu
CAG
[ENA]
>WENV058614
AACY023335614
Marine microbial communities from Global Ocean Sampling (GOS)
684
596
-
Leu
CAG
[ENA]
>W1610791992
LOJI01000005
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
94155
94069
-
Leu
CAG
[ENA]
¡û
>W1610792040
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
448025
448111
+
Leu
CAG
[ENA]
¡û
>W1611052748
MAIK01000303
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
370
456
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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