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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74051 (79 seq.)
>W1710818433
LKPF01000106
Bacillota
Enterococcus durans faecium [LKPF]
6381
6464
+
Leu
CAA
[ENA]
¡û
>W131027361
AJAH01000023
Bacillota
Enterococcus mundtii ATCC 882 [AJAH]
236104
236019
-
Leu
CAA
[ENA]
¡û
>W131033832
AJEX01000010
Bacillota
Enterococcus faecalis ATCC 27959 [AJEX]
6164
6249
+
Leu
CAA
[ENA]
¡û
>W1710989219
LPVT01000006
Bacillota
Enterococcus pernyi [LPVT]
306353
306268
-
Leu
CAA
[ENA]
¡û
>W131201452
ASWC01000001
Bacillota
Enterococcus mundtii ATCC 882 [ASWC]
851606
851691
+
Leu
CAA
[ENA]
¡û
>W131209440
ATIU01000004
Bacillota
Enterococcus faecium SD1C-2 [ATIU]
90
175
+
Leu
CAA
[ENA]
¡û
>W1711350289
MCRG01000010
Bacillota
Enterococcus mundtii [MCRG]
1393
1480
+
Leu
CAA
[ENA]
¡û
>W1711460382
MJEE01000008
Bacillota
Enterococcus durans [MJEE]
132413
132330
-
Leu
CAA
[ENA]
¡û
>W1711708564
MSTR01000008
Bacillota
Enterococcus mundtii [MSTR]
141221
141136
-
Leu
CAA
[ENA]
¡û
>W1712069283
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
337179
337264
+
Leu
CAA
[ENA]
¡û
>W1712069942
NGMS01000001
Bacillota
Enterococcus mundtii [NGMS]
577569
577654
+
Leu
CAA
[ENA]
¡û
>W131010856
AHYU01000020
Bacillota
Enterococcus durans ATCC 6056 [AHYU]
4177
4094
-
Leu
CAA
[ENA]
¡û
>W131098867
AOSM01000060
Bacillota
Enterococcus durans IPLA 655 [AOSM]
138561
138644
+
Leu
CAA
[ENA]
¡û
>W131202081
ASWM01000005
Bacillota
Enterococcus durans ATCC 6056 [ASWM]
1132058
1131975
-
Leu
CAA
[ENA]
¡û
>WENV180455165
OBXO01000459
[OBXO] human gut metagenome; faeces
32070
31985
-
Leu
CAA
[ENA]
¢þ
>W141054028
AODD01000015
Bacillota
Listeria grandensis FSL F6-971 [AODD]
1282
1369
+
Leu
CAA
[ENA]
¡û
>W141054095
AODE01000038
Bacillota
Listeria cornellensis FSL F6-969 [AODE]
1298
1385
+
Leu
CAA
[ENA]
¡û
>W141054404
AODJ01000035
Bacillota
Listeria weihenstephanensis FSL R9-0317 [AODJ]
27191
27103
-
Leu
CAA
[ENA]
¡û
>W141054490
AODK01000088
Bacillota
Listeria rocourtiae FSL F6-920 [AODK]
404
317
-
Leu
CAA
[ENA]
¡û
>W141054530
AODL01000017
Bacillota
Listeria riparia FSL S10-1204 [AODL]
23393
23305
-
Leu
CAA
[ENA]
¡û
>WENV181326359
OFLL01000142
[OFLL] metagenome; faeces
30529
30442
-
Leu
CAA
[ENA]
¢þ
>W141186407
AYKM01000026
Bacillota
Enterococcus faecalis MN16 [AYKM]
102
187
+
Leu
CAA
[ENA]
¡û
>W141187215
AYLU01000025
Bacillota
Enterococcus faecalis AZ19 [AYLU]
102
187
+
Leu
CAA
[ENA]
¡û
>WENV182539374
OIXV01004284
[OIXV] human gut metagenome; faeces
6578
6661
+
Leu
CAA
[ENA]
¢þ
>WENV182611150
OJJW01021116
[OJJW] metagenome; faeces
400
317
-
Leu
CAA
[ENA]
¢þ
>W141280611
JAHF01000003
Bacillota
Enterococcus faecalis B284 [JAHF]
295576
295661
+
Leu
CAA
[ENA]
¡û
>W141281377
JAHS01000001
Bacillota
Enterococcus faecalis B320 [JAHS]
6255
6340
+
Leu
CAA
[ENA]
¡û
>WENV183238633
OLQZ01002779
[OLQZ] human gut metagenome; faeces
1607
1522
-
Leu
CAA
[ENA]
¢þ
>WENV183293774
OLSK01001776
[OLSK] human gut metagenome; faeces
13101
13184
+
Leu
CAA
[ENA]
¢þ
>W141383597
JDFT01000023
Bacillota
Enterococcus mundtii CRL35 [JDFT]
35717
35632
-
Leu
CAA
[ENA]
¡û
>C181030414
CP018061
Bacillota
Enterococcus mundtii DSM 4838 [CP018061]
921437
921522
+
Leu
CAA
-
¡û
>C181062227
CP022340
Bacillota
Enterococcus mundtii EMB156 [CP022340]
1021159
1021244
+
Leu
CAA
-
¡û
>C181074182
CP022930
Bacillota
Enterococcus durans BDGP3 [CP022930]
2029778
2029861
+
Leu
CAA
-
¡û
>C191003254
AP018538
Bacillota
Enterococcus faecalis KUB3006 [AP018538]
847695
847780
+
Leu
CAA
-
¡û
>C191003316
AP018543
Bacillota
Enterococcus faecalis KUB3007 [AP018543]
844627
844712
+
Leu
CAA
-
¡û
>C191008663
CP011102
Bacillota
Listeria weihenstephanensis WS 4560 [CP011102]
635205
635293
+
Leu
CAA
-
¡û
>C191035395
CP025473
Bacillota
Enterococcus mundtii Pe161 [CP025473]
975809
975894
+
Leu
CAA
-
¡û
>C191062497
CP028928
Bacillota
Lactobacillus sp. Koumiss [CP028928]
1902055
1901972
-
Leu
CAA
-
¡û
>C191063004
CP029066
Bacillota
Enterococcus mundtii Pe103 [CP029066]
1026928
1027013
+
Leu
CAA
-
¡û
>C191162670
CP038865
Bacillota
Vagococcus xieshaowenii personal::cf-49 [CP038865]
270245
270329
+
Leu
CAA
-
¡û
>W1910178426
BJEY01000037
Bacillota
Listeria newyorkensis Ln2-1 [BJEY]
892
806
-
Leu
CAA
[ENA]
¡û
>C141000114
AP013036
Bacillota
Enterococcus mundtii QU 25 QU25 [AP013036]
1056586
1056671
+
Leu
CAA
[Ensembl]
¡û
>W1910496533
FXUT01000033
Bacillota
Listeria costaricensis 102 [FXUT]
10474
10388
-
Leu
CAA
[ENA]
¡û
>W1910605664
LEPB01000004
Bacillota
Enterococcus durans 4EA1 [LEPB]
216025
216108
+
Leu
CAA
[ENA]
¡û
>W1910777269
MPDH01000040
Bacillota
Listeria newyorkensis F1604011-044 [MPDH]
920
834
-
Leu
CAA
[ENA]
¡û
>W1910870834
NCVP01000053
Bacillota
Enterococcus durans 18S [NCVP]
4603
4686
+
Leu
CAA
[ENA]
¡û
>W1910910988
NHNF01000001
Bacillota
Enterococcus faecalis 12_Tun [NHNF]
945324
945239
-
Leu
CAA
[ENA]
¡û
>W1911573371
PDEB01000004
Bacillota
Enterococcus durans FDAARGOS_396 [PDEB]
634917
635000
+
Leu
CAA
[ENA]
¡û
>W1911709435
QPKR01000030
Bacillota
Listeria sp. SHR_NRA_18 [QPKR]
1310
1396
+
Leu
CAA
[ENA]
¡û
>W1810111151
PHIL01000030
Bacillota
Enterococcus mundtii EM01 [PHIL]
137330
137245
-
Leu
CAA
[ENA]
¡û
>W1810311676
PTUS01000067
Bacillota
Enterococcus mundtii CVM N59820F [PTUS]
1509
1595
+
Leu
CAA
[ENA]
¡û
>W1810314093
PTWL01000057
Bacillota
Enterococcus durans CVM N59549F [PTWL]
21624
21539
-
Leu
CAA
[ENA]
¡û
>W1810314096
PTWL01000057
Bacillota
Enterococcus durans CVM N59549F [PTWL]
21315
21232
-
Leu
CAA
[ENA]
¡û
>W1810315221
PTXG01000020
Bacillota
Enterococcus faecium CVM N59439F [PTXG]
2165
2080
-
Leu
CAA
[ENA]
¡û
>W1810317146
PTYT01000081
Bacillota
Enterococcus faecium CVM N53533 [PTYT]
1286
1371
+
Leu
CAA
[ENA]
¡û
>W1810319751
PUAP01000076
Bacillota
Enterococcus mundtii CVM N55263 [PUAP]
199
114
-
Leu
CAA
[ENA]
¡û
>W1810401189
PYGS01000165
Bacillota
Enterococcus mundtii K7-EM [PYGS]
1798
1713
-
Leu
CAA
[ENA]
¡û
>W1810401236
PYGT01000075
Bacillota
Enterococcus mundtii C11-EM [PYGT]
1860
1775
-
Leu
CAA
[ENA]
¡û
>W1810401270
PYGU01000117
Bacillota
Enterococcus mundtii P2-EM [PYGU]
1798
1713
-
Leu
CAA
[ENA]
¡û
>W1810814804
QSAN01000161
Bacillota
Enterococcus durans AF11-32-H [QSAN]
1573
1656
+
Leu
CAA
[ENA]
¡û
>C151094324
CP012366
Bacillota
Enterococcus durans KLDS6.0933 [CP012366]
2345648
2345731
+
Leu
CAA
-
¡û
>C151094638
CP012384
Bacillota
Enterococcus durans KLDS 6.0930 [CP012384]
1273918
1274001
+
Leu
CAA
-
¡û
>W1510001366
AZHN01000010
Bacillota
Listeria newyorkensis 1903 [AZHN]
846
759
-
Leu
CAA
[ENA]
¡û
>W10125389
AEBY01000047
Bacillota
Enterococcus faecalis TX0109 [AEBY]
30486
30401
-
Leu
CAA
[ENA]
¡û
>W1511220999
JNEZ01000027
Bacillota
Listeriaceae bacterium FSL A5-0209 [JNEZ]
927
840
-
Leu
CAA
[ENA]
¡û
>W1511221049
JNFA01000006
Bacillota
Listeria booriae FSL A5-0281 [JNFA]
1284
1372
+
Leu
CAA
[ENA]
¡û
>W1511221137
JNFB01000030
Bacillota
Listeria newyorkensis FSL M6-0635 [JNFB]
870
783
-
Leu
CAA
[ENA]
¡û
>W11132276
AEBY01000047
Bacillota
Enterococcus faecalis TX0109 [AEBY]
30486
30401
-
Leu
CAA
[ENA]
¡û
>W121006645
AFWZ01000281
Bacillota
Enterococcus mundtii crl1656 [AFWZ]
111
196
+
Leu
CAA
[ENA]
¡û
>W1610066814
BCQB01000089
Bacillota
Enterococcus durans NBRC 100479 [BCQB]
3976
3893
-
Leu
CAA
[ENA]
¡û
>W1610293779
FFHQ01000001
Bacillota
Enterococcus faecalis monocytogenes [FFHQ]
1164
1249
+
Leu
CAA
[ENA]
¡û
>W1610682840
LKPF01000106
Bacillota
Enterococcus durans faecium [LKPF]
6381
6464
+
Leu
CAA
[ENA]
¡û
>W1610844095
LPVT01000006
Bacillota
Enterococcus pernyi [LPVT]
306353
306268
-
Leu
CAA
[ENA]
¡û
>W1710064245
BCQB01000089
Bacillota
Enterococcus durans NBRC 100479 [BCQB]
3976
3893
-
Leu
CAA
[ENA]
¡û
>W1710294413
FFHQ01000001
Bacillota
Enterococcus faecalis monocytogenes [FFHQ]
1164
1249
+
Leu
CAA
[ENA]
¡û
>W1710569098
FOUC01000025
Bacillota
Enterococcus mundtii [FOUC]
1552
1637
+
Leu
CAA
[ENA]
¡û
>W1710659621
JXKV01000042
Bacillota
Enterococcus mundtii [JXKV]
15976
15891
-
Leu
CAA
[ENA]
¡û
>W1710659808
JXLB01000009
Bacillota
Enterococcus ratti [JXLB]
1
84
+
Leu
CAA
[ENA]
¡û
>W1710659811
JXLB01000009
Bacillota
Enterococcus ratti [JXLB]
308
394
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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