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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7409 (101 seq.)
>W1712039230
NFJN01000011
Actinomycetota
Gordonibacter urolithinfaciens [NFJN]
42187
42279
+
Ser
CGA
[ENA]
¡û
>C171131370
LT827128
Actinomycetota
Gordonibacter massiliensis [LT827128]
2626793
2626885
+
Ser
CGA
-
¡û
>W141001145
ADMD01000009
Actinomycetota
Slackia piriformis YIT 12062 [ADMD]
78311
78403
+
Ser
CGA
[ENA]
¡û
>WENV180337654
OBLG01079940
[OBLG] human gut metagenome; human gut
93
185
+
Ser
CGA
[ENA]
¢þ
>WENV180483627
OBZH01001389
[OBZH] human gut metagenome; faeces
6419
6327
-
Ser
CGA
[ENA]
¢þ
>WENV180812818
ODJN01169439
[ODJN] human metagenome; G_DNA_Stool
111
203
+
Ser
CGA
[ENA]
¢þ
>WENV181342472
OFMI01012619
[OFMI] human gut metagenome; human gut
1331
1239
-
Ser
CGA
[ENA]
¢þ
>WENV181442180
OGDN01075895
[OGDN] human gut metagenome; human gut
578
486
-
Ser
CGA
[ENA]
¢þ
>WENV181688291
OGOX01027084
[OGOX] human gut metagenome; faeces
67
159
+
Ser
CGA
[ENA]
¢þ
>WENV181697237
OGPD01038995
[OGPD] human gut metagenome; faeces
483
575
+
Ser
CGA
[ENA]
¢þ
>WENV181751009
OGQP01019407
[OGQP] human gut metagenome; faeces
6
98
+
Ser
CGA
[ENA]
¢þ
>WENV181754245
OGQR01008941
[OGQR] human gut metagenome; faeces
3561
3469
-
Ser
CGA
[ENA]
¢þ
>WENV181757181
OGQT01010859
[OGQT] human gut metagenome; faeces
1759
1667
-
Ser
CGA
[ENA]
¢þ
>WENV181794859
OGRS01003833
[OGRS] human gut metagenome; faeces
5476
5568
+
Ser
CGA
[ENA]
¢þ
>WENV181812945
OGTB01008832
[OGTB] human gut metagenome; faeces
2856
2948
+
Ser
CGA
[ENA]
¢þ
>WENV181862628
OGWS01012154
[OGWS] human gut metagenome; faeces
68
160
+
Ser
CGA
[ENA]
¢þ
>WENV181883603
OGXI01007357
[OGXI] human gut metagenome; faeces
5046
4954
-
Ser
CGA
[ENA]
¢þ
>WENV181919879
OGYI01004544
[OGYI] human gut metagenome; faeces
4088
4180
+
Ser
CGA
[ENA]
¢þ
>WENV181957981
OGZL01029781
[OGZL] human gut metagenome; faeces
851
759
-
Ser
CGA
[ENA]
¢þ
>WENV182205326
OHPS01002180
[OHPS] human gut metagenome; feces
101
9
-
Ser
CGA
[ENA]
¢þ
>WENV182285597
OHVN01013968
[OHVN] human gut metagenome; feces
298
206
-
Ser
CGA
[ENA]
¢þ
>WENV182287680
OHVS01021436
[OHVS] human gut metagenome; feces
272
180
-
Ser
CGA
[ENA]
¢þ
>WENV182306170
OHXC01004837
[OHXC] human gut metagenome; feces
80
172
+
Ser
CGA
[ENA]
¢þ
>WENV182311112
OHXQ01007593
[OHXQ] human gut metagenome; feces
303
211
-
Ser
CGA
[ENA]
¢þ
>WENV182356678
OIBR01014773
[OIBR] human gut metagenome; feces
315
223
-
Ser
CGA
[ENA]
¢þ
>WENV182360771
OICB01021187
[OICB] human gut metagenome; feces
580
672
+
Ser
CGA
[ENA]
¢þ
>WENV182374182
OIDA01017108
[OIDA] human gut metagenome; feces
536
444
-
Ser
CGA
[ENA]
¢þ
>WENV182379161
OIDL01006007
[OIDL] human gut metagenome; feces
1640
1548
-
Ser
CGA
[ENA]
¢þ
>WENV182515289
OIWN01000225
[OIWN] human gut metagenome; faeces
5596
5504
-
Ser
CGA
[ENA]
¢þ
>WENV182538638
OIXV01000056
[OIXV] human gut metagenome; faeces
102359
102267
-
Ser
CGA
[ENA]
¢þ
>WENV182631721
OJKW01017947
[OJKW] metagenome; faeces
191
283
+
Ser
CGA
[ENA]
¢þ
>WENV182873288
OKRW01000184
[OKRW] human gut metagenome; faeces
50886
50794
-
Ser
CGA
[ENA]
¢þ
>WENV183033877
OLFY01015025
[OLFY] human gut metagenome; faeces
1130
1038
-
Ser
CGA
[ENA]
¢þ
>WENV183099787
OLNF01018222
[OLNF] human gut metagenome; faeces
2835
2743
-
Ser
CGA
[ENA]
¢þ
>WENV183106328
OLNL01004548
[OLNL] human gut metagenome; faeces
4189
4097
-
Ser
CGA
[ENA]
¢þ
>WENV183109458
OLNN01006571
[OLNN] human gut metagenome; faeces
3997
3905
-
Ser
CGA
[ENA]
¢þ
>WENV183123571
OLNW01001251
[OLNW] human gut metagenome; faeces
13523
13431
-
Ser
CGA
[ENA]
¢þ
>WENV183126788
OLNY01038019
[OLNY] human gut metagenome; faeces
510
602
+
Ser
CGA
[ENA]
¢þ
>WENV183128712
OLNZ01017615
[OLNZ] human gut metagenome; faeces
1656
1748
+
Ser
CGA
[ENA]
¢þ
>WENV183132623
OLOB01004383
[OLOB] human gut metagenome; faeces
3207
3115
-
Ser
CGA
[ENA]
¢þ
>WENV183143531
OLOK01058864
[OLOK] human gut metagenome; faeces
630
538
-
Ser
CGA
[ENA]
¢þ
>WENV183145668
OLOM01000638
[OLOM] human gut metagenome; faeces
10
102
+
Ser
CGA
[ENA]
¢þ
>WENV183148099
OLON01011084
[OLON] human gut metagenome; faeces
2532
2440
-
Ser
CGA
[ENA]
¢þ
>WENV183149765
OLOO01020587
[OLOO] human gut metagenome; faeces
831
923
+
Ser
CGA
[ENA]
¢þ
>WENV183156352
OLOS01007261
[OLOS] human gut metagenome; faeces
3188
3096
-
Ser
CGA
[ENA]
¢þ
>WENV183161562
OLOV01009426
[OLOV] human gut metagenome; faeces
715
623
-
Ser
CGA
[ENA]
¢þ
>WENV183162884
OLOW01002836
[OLOW] human gut metagenome; faeces
3187
3095
-
Ser
CGA
[ENA]
¢þ
>WENV183168319
OLOZ01010228
[OLOZ] human gut metagenome; faeces
2308
2216
-
Ser
CGA
[ENA]
¢þ
>WENV183171616
OLPC01000510
[OLPC] human gut metagenome; faeces
3673
3765
+
Ser
CGA
[ENA]
¢þ
>WENV183174754
OLPE01009967
[OLPE] human gut metagenome; faeces
1872
1780
-
Ser
CGA
[ENA]
¢þ
>WENV183175821
OLPF01001011
[OLPF] human gut metagenome; faeces
13030
12938
-
Ser
CGA
[ENA]
¢þ
>WENV183178198
OLPG01041196
[OLPG] human gut metagenome; faeces
814
722
-
Ser
CGA
[ENA]
¢þ
>WENV183184086
OLPL01014296
[OLPL] human gut metagenome; faeces
1005
913
-
Ser
CGA
[ENA]
¢þ
>WENV183187156
OLPO01007236
[OLPO] human gut metagenome; faeces
1242
1334
+
Ser
CGA
[ENA]
¢þ
>WENV183189802
OLPQ01010428
[OLPQ] human gut metagenome; faeces
571
663
+
Ser
CGA
[ENA]
¢þ
>WENV183190412
OLPR01000270
[OLPR] human gut metagenome; faeces
37171
37079
-
Ser
CGA
[ENA]
¢þ
>WENV183195267
OLPT01003645
[OLPT] human gut metagenome; faeces
3665
3573
-
Ser
CGA
[ENA]
¢þ
>WENV183197363
OLPU01034154
[OLPU] human gut metagenome; faeces
1170
1262
+
Ser
CGA
[ENA]
¢þ
>WENV183198508
OLPV01002150
[OLPV] human gut metagenome; faeces
9515
9423
-
Ser
CGA
[ENA]
¢þ
>WENV183201679
OLPW01088083
[OLPW] human gut metagenome; faeces
551
459
-
Ser
CGA
[ENA]
¢þ
>WENV183204122
OLPY01014219
[OLPY] human gut metagenome; faeces
2115
2023
-
Ser
CGA
[ENA]
¢þ
>WENV183208800
OLQB01005210
[OLQB] human gut metagenome; faeces
3134
3042
-
Ser
CGA
[ENA]
¢þ
>WENV183214956
OLQG01000005
[OLQG] human gut metagenome; faeces
93800
93708
-
Ser
CGA
[ENA]
¢þ
>WENV183216628
OLQH01003711
[OLQH] human gut metagenome; faeces
4521
4613
+
Ser
CGA
[ENA]
¢þ
>WENV183217927
OLQI01004132
[OLQI] human gut metagenome; faeces
10
102
+
Ser
CGA
[ENA]
¢þ
>WENV183220063
OLQK01007089
[OLQK] human gut metagenome; faeces
3228
3136
-
Ser
CGA
[ENA]
¢þ
>WENV183233779
OLQV01003574
[OLQV] human gut metagenome; faeces
10
102
+
Ser
CGA
[ENA]
¢þ
>WENV183240099
OLRA01003250
[OLRA] human gut metagenome; faeces
5247
5339
+
Ser
CGA
[ENA]
¢þ
>WENV183242861
OLRC01001909
[OLRC] human gut metagenome; faeces
11193
11101
-
Ser
CGA
[ENA]
¢þ
>WENV183254120
OLRJ01001055
[OLRJ] human gut metagenome; faeces
12073
12165
+
Ser
CGA
[ENA]
¢þ
>WENV183260039
OLRO01071143
[OLRO] human gut metagenome; faeces
217
125
-
Ser
CGA
[ENA]
¢þ
>WENV183261297
OLRP01016328
[OLRP] human gut metagenome; faeces
2161
2069
-
Ser
CGA
[ENA]
¢þ
>WENV183262233
OLRQ01001038
[OLRQ] human gut metagenome; faeces
14395
14303
-
Ser
CGA
[ENA]
¢þ
>WENV183263052
OLRQ01041034
[OLRQ] human gut metagenome; faeces
557
649
+
Ser
CGA
[ENA]
¢þ
>WENV183280093
OLSB01002066
[OLSB] human gut metagenome; faeces
4507
4599
+
Ser
CGA
[ENA]
¢þ
>WENV183286345
OLSE01008214
[OLSE] human gut metagenome; faeces
545
637
+
Ser
CGA
[ENA]
¢þ
>WENV183290003
OLSG01040084
[OLSG] human gut metagenome; faeces
39
131
+
Ser
CGA
[ENA]
¢þ
>WENV183291804
OLSI01017200
[OLSI] human gut metagenome; faeces
1189
1097
-
Ser
CGA
[ENA]
¢þ
>WENV183292154
OLSJ01000211
[OLSJ] human gut metagenome; faeces
49669
49761
+
Ser
CGA
[ENA]
¢þ
>WENV183296074
OLSL01010363
[OLSL] human gut metagenome; faeces
2368
2276
-
Ser
CGA
[ENA]
¢þ
>WENV183296197
OLSL01016858
[OLSL] human gut metagenome; faeces
10
102
+
Ser
CGA
[ENA]
¢þ
>WENV183297566
OLSM01004802
[OLSM] human gut metagenome; faeces
2451
2359
-
Ser
CGA
[ENA]
¢þ
>WENV183340904
OLWL01074246
[OLWL] human gut metagenome; feces
437
529
+
Ser
CGA
[ENA]
¢þ
>WENV183358455
OLXG01080440
[OLXG] human gut metagenome; feces
360
452
+
Ser
CGA
[ENA]
¢þ
>WENV183382773
OLYL01014936
[OLYL] human gut metagenome; feces
363
271
-
Ser
CGA
[ENA]
¢þ
>WENV183404595
OLZW01053818
[OLZW] human gut metagenome; feces
566
658
+
Ser
CGA
[ENA]
¢þ
>WENV183438956
OMCF01014936
[OMCF] human gut metagenome; feces
363
271
-
Ser
CGA
[ENA]
¢þ
>WENV183658296
OQWM01001278
[OQWM] human gut metagenome; human gut
1445
1353
-
Ser
CGA
[ENA]
¢þ
>WENV183784404
PPYF01260011
[PPYF] human gut metagenome; stool from patient with Crohn's disease
589
497
-
Ser
CGA
[ENA]
¢þ
>C181221172
LT900217
Actinomycetota
Gordonibacter urolithinfaciens DSM 27213T [LT900217]
1617613
1617521
-
Ser
CGA
-
¡û
>W09108675
ABTM01000002
Actinomycetota
Cryptobacterium curtum DSM 15641 [ABTM]
286409
286317
-
Ser
CGA
[ENA]
¡û
>W1911679831
QIBV01000001
Actinomycetota
Gordonibacter urolithinfaciens JCM 16058 [QIBV]
408801
408709
-
Ser
CGA
[ENA]
¡û
>W1911679871
QIBW01000001
Actinomycetota
Gordonibacter urolithinfaciens DSM 27213 [QIBW]
113247
113339
+
Ser
CGA
[ENA]
¡û
>W1911679958
QIBX01000023
Actinomycetota
Slackia equolifaciens DSM 24851 [QIBX]
26350
26442
+
Ser
CGA
[ENA]
¡û
>W1911679979
QIBY01000006
Actinomycetota
Parvibacter caecicola DSM 22242 [QIBY]
75808
75716
-
Ser
CGA
[ENA]
¡û
>W1911680173
QICB01000008
Actinomycetota
Slackia faecicanis DSM 17537 [QICB]
2911
2819
-
Ser
CGA
[ENA]
¡û
>W1810240825
PPTS01000001
Actinomycetota
Gordonibacter pamelaeae 3C [PPTS]
15872
15964
+
Ser
CGA
[ENA]
¡û
>C10102860
CP001682
Actinomycetota
Cryptobacterium curtum DSM 15641 [CP001682]
1317880
1317788
-
Ser
CGA
[Ensembl]
¡û
>C161035112
CP011402
Actinomycetota
Denitrobacterium detoxificans NPOH1 [CP011402]
407820
407912
+
Ser
CGA
[Ensembl]
¡û
>C161103632
FP929047
Actinomycetota
Gordonibacter pamelaeae 7-10-1-b 7-10-1-bT [FP929047]
1266506
1266414
-
Ser
CGA
[Ensembl]
¡û
>W1710548886
FOEC01000010
Actinomycetota
Denitrobacterium detoxificans [FOEC]
58961
58869
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK