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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74110 (56 seq.)
>W1710777903
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
1202060
1201974
-
Leu
CAA
[ENA]
¡û
>W1710892053
LNDJ01000035
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
19270
19184
-
Leu
CAA
[ENA]
¡û
>W1711303091
MAJM01000001
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
676931
677017
+
Leu
CAA
[ENA]
¡û
>W1711682928
MRYA01000007
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
77300
77214
-
Leu
CAA
[ENA]
¡û
>W1711682954
MRYB01000006
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
25018
25104
+
Leu
CAA
[ENA]
¡û
>W1711683008
MRYC01000015
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
39031
39117
+
Leu
CAA
[ENA]
¡û
>C171019154
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
76152
76066
-
Leu
CAA
-
¡û
>W131180587
ARNF01000082
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
105977
106063
+
Leu
CAA
[ENA]
¡û
>C015971
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
1887509
1887595
+
Leu
CAA
[Ensembl]
¡û
>WENV180101016
OAOU01000001
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
238525
238611
+
Leu
CAA
[ENA]
¢þ
>WENV180101046
OAOU01000050
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
24156
24242
+
Leu
CAA
[ENA]
¢þ
>WENV180101168
OAOU01002861
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
15
101
+
Leu
CAA
[ENA]
¢þ
>W141195644
AYUI01000003
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
70431
70517
+
Leu
CAA
[ENA]
¡û
>W141199973
AYXM01000083
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
8274
8188
-
Leu
CAA
[ENA]
¡û
>W141200003
AYXN01000029
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
37005
36919
-
Leu
CAA
[ENA]
¡û
>W141200510
AYXZ01000072
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
3984
3898
-
Leu
CAA
[ENA]
¡û
>W141200554
AYYA01000009
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
23877
23963
+
Leu
CAA
[ENA]
¡û
>W141233973
BAWG01000004
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
241265
241179
-
Leu
CAA
[ENA]
¡û
>W141233994
BAWH01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
255271
255185
-
Leu
CAA
[ENA]
¡û
>WENV182542193
OJAV01008383
[OJAV] seawater metagenome; Sea water
992
906
-
Leu
CAA
[ENA]
¢þ
>WENV182549957
OJBZ01000835
[OJBZ] seawater metagenome; Sea water
87
1
-
Leu
CAA
[ENA]
¢þ
>WENV182562333
OJDZ01000944
[OJDZ] seawater metagenome; Sea water
12342
12256
-
Leu
CAA
[ENA]
¢þ
>WENV183707641
PDWI01009637
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
97
11
-
Leu
CAA
[ENA]
¢þ
>WENV183712487
PDWI01101566
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
681
767
+
Leu
CAA
[ENA]
¢þ
>WENV183721668
PDWJ01079780
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
201
115
-
Leu
CAA
[ENA]
¢þ
>WENV170014717
AYSL01006583
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
153
67
-
Leu
CAA
[ENA]
¢þ
>WENV170014756
AYSL01009402
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
152
66
-
Leu
CAA
[ENA]
¢þ
>WENV170291741
CESA01193760
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
114
200
+
Leu
CAA
[ENA]
¢þ
>WENV170497663
CEVS01215403
[CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
142
228
+
Leu
CAA
[ENA]
¢þ
>WENV170539360
CEWR01185622
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
474
388
-
Leu
CAA
[ENA]
¢þ
>WENV170579217
FUFK010038315
[FUFK] metagenome; unknown
60650
60736
+
Leu
CAA
[ENA]
¢þ
>WENV170674188
LAZR01049631
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
413
327
-
Leu
CAA
[ENA]
¢þ
>WENV170792103
MDSV01094175
[MDSV] marine metagenome; seawater
8199
8285
+
Leu
CAA
[ENA]
¢þ
>WENV170800664
MDSV01234150
[MDSV] marine metagenome; seawater
18292
18206
-
Leu
CAA
[ENA]
¢þ
>WENV170934706
MDTG01243233
[MDTG] marine metagenome; seawater
1996
1910
-
Leu
CAA
[ENA]
¢þ
>C181056021
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
584933
585019
+
Leu
CAA
-
¡û
>C191163840
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2076830
2076916
+
Leu
CAA
-
¡û
>W1910377597
FUKN01000013
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
443763
443677
-
Leu
CAA
[ENA]
¡û
>W1910891649
NEXR01000004
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
330874
330960
+
Leu
CAA
[ENA]
¡û
>W1911203630
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
501788
501874
+
Leu
CAA
[ENA]
¡û
>W1911397580
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
2489129
2489043
-
Leu
CAA
[ENA]
¡û
>W1911534873
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
3062705
3062791
+
Leu
CAA
[ENA]
¡û
>W1810155464
PJAS01000059
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
121910
121824
-
Leu
CAA
[ENA]
¡û
>W1810155496
PJAT01000065
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
4741
4655
-
Leu
CAA
[ENA]
¡û
>W1810156184
PJBD01000035
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
643
557
-
Leu
CAA
[ENA]
¡û
>W1810156322
PJBF01000041
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
29676
29590
-
Leu
CAA
[ENA]
¡û
>W1810156430
PJBH01000061
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
149879
149965
+
Leu
CAA
[ENA]
¡û
>W1810692660
QLKS01000002
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
337776
337690
-
Leu
CAA
[ENA]
¡û
>C151097213
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
613639
613725
+
Leu
CAA
-
¡û
>C161079287
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
1164679
1164593
-
Leu
CAA
[Ensembl]
¡û
>W1610112413
CZJV02000110
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
63267
63353
+
Leu
CAA
[ENA]
¡û
>C131017381
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
1868238
1868324
+
Leu
CAA
[Ensembl]
¡û
>W1610642089
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
1202060
1201974
-
Leu
CAA
[ENA]
¡û
>W1610752319
LNDJ01000035
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
19270
19184
-
Leu
CAA
[ENA]
¡û
>W1710115117
CZJV02000110
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
63267
63353
+
Leu
CAA
[ENA]
¡û
>W1710513821
FNAL01000019
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
29689
29603
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK