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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74115 (59 seq.)
>W1710797078
LJST01000017
Gammaproteobacteria
Halomonas sp. HL-93 [LJST]
843
929
+
Leu
CAG
[ENA]
¡û
>W1711339808
MCAP01000014
Gammaproteobacteria
Salinicola sp. MIT1003 [MCAP]
10613
10527
-
Leu
CAG
[ENA]
¡û
>W1711689021
MSDQ01000071
Gammaproteobacteria
Chromohalobacter japonicus [MSDQ]
519
605
+
Leu
CAG
[ENA]
¡û
>W1711957918
NBVS01000003
Gammaproteobacteria
Cobetia sp. QF-1 [NBVS]
338952
339038
+
Leu
CAG
[ENA]
¡û
>C171057405
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
3798430
3798516
+
Leu
CAG
-
¡û
>C171057408
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
3798957
3799043
+
Leu
CAG
-
¡û
>C171100929
CP019915
Gammaproteobacteria
Halomonas sp. 'Soap Lake #7' [CP019915]
2470215
2470301
+
Leu
CAG
-
¡û
>C171117506
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
2532111
2532025
-
Leu
CAG
-
¡û
>C171117507
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
2531938
2531852
-
Leu
CAG
-
¡û
>C171117970
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
674218
674304
+
Leu
CAG
-
¡û
>C171117971
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
674391
674477
+
Leu
CAG
-
¡û
>W131225937
AUDZ01000012
Gammaproteobacteria
Halomonas halocynthiae DSM 14573 [AUDZ]
142284
142198
-
Leu
CAG
[ENA]
¡û
>W131044851
AMQY01000022
Gammaproteobacteria
Halomonas jeotgali Hwa [AMQY]
43832
43918
+
Leu
CAG
[ENA]
¡û
>W131044852
AMQY01000022
Gammaproteobacteria
Halomonas jeotgali Hwa [AMQY]
44095
44181
+
Leu
CAG
[ENA]
¡û
>W131044853
AMQY01000022
Gammaproteobacteria
Halomonas jeotgali Hwa [AMQY]
44215
44301
+
Leu
CAG
[ENA]
¡û
>C006998
CP000285
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [CP000285]
997802
997716
-
Leu
CAG
[Ensembl]
¡û
>WENV181234749
OFEU01003833
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
316
230
-
Leu
CAG
[ENA]
¢þ
>WENV182593132
OJIT01000350
[OJIT] seawater metagenome; Sea water
7501
7587
+
Leu
CAG
[ENA]
¢þ
>WENV170250848
CEQT01026686
[CEQT] marine metagenome genome assembly TARA_072_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2233
2319
+
Leu
CAG
[ENA]
¢þ
>WENV170250851
CEQT01026686
[CEQT] marine metagenome genome assembly TARA_072_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2759
2845
+
Leu
CAG
[ENA]
¢þ
>WENV170266339
CERE01059319
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
159
245
+
Leu
CAG
[ENA]
¢þ
>WENV170423860
CEUO01036615
[CEUO] marine metagenome genome assembly TARA_124_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
122
208
+
Leu
CAG
[ENA]
¢þ
>WENV170672371
LAZR01000083
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
78703
78617
-
Leu
CAG
[ENA]
¢þ
>WENV170821082
MDSY01015919
[MDSY] marine metagenome; seawater
2849
2763
-
Leu
CAG
[ENA]
¢þ
>WENV170821085
MDSY01015919
[MDSY] marine metagenome; seawater
2323
2237
-
Leu
CAG
[ENA]
¢þ
>WENV170935060
MDTG01250101
[MDTG] marine metagenome; seawater
255
169
-
Leu
CAG
[ENA]
¢þ
>C181019896
CP016490
Gammaproteobacteria
Halomonas sp. GFAJ-1 [CP016490]
3446843
3446929
+
Leu
CAG
-
¡û
>C181044743
CP020469
Gammaproteobacteria
Halomonas sp. 'Soap Lake #6' [CP020469]
2470215
2470301
+
Leu
CAG
-
¡û
>C191028824
CP024811
Gammaproteobacteria
Halomonas alkaliphila X3 [CP024811]
2595471
2595385
-
Leu
CAG
-
¡û
>C191123891
CP034367
Gammaproteobacteria
Halomonas venusta MA-ZP17-13 [CP034367]
3052144
3052230
+
Leu
CAG
-
¡û
>W141555804
JHQL01000004
Gammaproteobacteria
Halomonas alkaliantarctica [JHQL]
45283
45369
+
Leu
CAG
[ENA]
¡û
>W141555806
JHQL01000004
Gammaproteobacteria
Halomonas alkaliantarctica [JHQL]
45608
45694
+
Leu
CAG
[ENA]
¡û
>W141564656
JIAY01000011
Gammaproteobacteria
Halomonas sp. 19A_GOM-1509m [JIAY]
145110
145024
-
Leu
CAG
[ENA]
¡û
>W1910237355
FPLA01000092
Gammaproteobacteria
Cobetia marina MM1IDA2H-1 [FPLA]
136552
136466
-
Leu
CAG
[ENA]
¡û
>W1910237358
FPLA01000092
Gammaproteobacteria
Cobetia marina MM1IDA2H-1 [FPLA]
136025
135939
-
Leu
CAG
[ENA]
¡û
>W1911148571
NPEY01000009
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
5971
6057
+
Leu
CAG
[ENA]
¡û
>W1911203569
NRGW01000001
Gammaproteobacteria
Halomonas sp. JB37 [NRGW]
1777353
1777267
-
Leu
CAG
[ENA]
¡û
>W1911495784
OBQJ01000004
Gammaproteobacteria
Chromohalobacter canadensis USBA 855 [OBQJ]
265158
265244
+
Leu
CAG
[ENA]
¡û
>W1911539854
ONZI01000002
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
526860
526946
+
Leu
CAG
[ENA]
¡û
>W1911539855
ONZI01000002
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
527030
527116
+
Leu
CAG
[ENA]
¡û
>W1810156483
PJBI01000050
Gammaproteobacteria
Halomonas sp. Choline-3u-9 [PJBI]
39832
39918
+
Leu
CAG
[ENA]
¡û
>W1810444336
PZJP01000003
Gammaproteobacteria
Salinicola aestuarinus CPA62 [PZJP]
212585
212671
+
Leu
CAG
[ENA]
¡û
>W1810609433
QGTY01000006
Gammaproteobacteria
Chromohalobacter salexigens 40a_TX [QGTY]
97085
97171
+
Leu
CAG
[ENA]
¡û
>W1810695959
QLSX01000002
Gammaproteobacteria
Halomonas taeanensis USBA-857 [QLSX]
143788
143874
+
Leu
CAG
[ENA]
¡û
>W1810786986
QRDJ01000006
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
334730
334644
-
Leu
CAG
[ENA]
¡û
>W1810786987
QRDJ01000006
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
334557
334471
-
Leu
CAG
[ENA]
¡û
>C151075885
CP011052
Gammaproteobacteria
Halomonas sp. KO116 [CP011052]
1759437
1759351
-
Leu
CAG
[Ensembl]
¡û
>W1510072035
CDGZ01000013
Gammaproteobacteria
Chromohalobacter japonicus CJ [CDGZ]
911458
911544
+
Leu
CAG
[ENA]
¡û
>W11171856
AFQW01000008
Gammaproteobacteria
Halomonas sp. TD01 [AFQW]
35322
35236
-
Leu
CAG
[ENA]
¡û
>W11180608
AGIB01000075
Gammaproteobacteria
Halomonas sp. HAL1 [AGIB]
56499
56413
-
Leu
CAG
[ENA]
¡û
>W121023773
AHBC01000019
Gammaproteobacteria
Halomonas sp. GFAJ-1 [AHBC]
47835
47921
+
Leu
CAG
[ENA]
¡û
>W1610612223
LGEN01000010
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
73418
73504
+
Leu
CAG
[ENA]
¡û
>W1610661035
LJST01000017
Gammaproteobacteria
Halomonas sp. HL-93 [LJST]
843
929
+
Leu
CAG
[ENA]
¡û
>W1710518743
FNEF01000015
Gammaproteobacteria
Halomonas titanicae DSM 26667 [FNEF]
88098
88012
-
Leu
CAG
[ENA]
¡û
>W1710523946
FNII01000014
Gammaproteobacteria
Halomonas arcis [FNII]
36102
36188
+
Leu
CAG
[ENA]
¡û
>W1710558503
FOLY01000004
Gammaproteobacteria
Kushneria avicenniae [FOLY]
114983
115069
+
Leu
CAG
[ENA]
¡û
>W1710558504
FOLY01000004
Gammaproteobacteria
Kushneria avicenniae [FOLY]
115157
115243
+
Leu
CAG
[ENA]
¡û
>W1710628335
JPUA01000011
Gammaproteobacteria
Halomonas campaniensis [JPUA]
122562
122476
-
Leu
CAG
[ENA]
¡û
>W1710733729
LGEN01000010
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
73418
73504
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK