This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74685 (68 seq.)
>W1711069014
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
1794
1879
+
Leu
CAA
[ENA]
¡û
>W131196455
ASTI01000008
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
1716
1801
+
Leu
CAA
[ENA]
¡û
>W1711484759
MKDC01000037
Bacillota
Latilactobacillus sakei [MKDC]
1715
1800
+
Leu
CAA
[ENA]
¡û
>W1711484812
MKDD01000022
Bacillota
Latilactobacillus sakei [MKDD]
17215
17130
-
Leu
CAA
[ENA]
¡û
>W1711484846
MKDE01000010
Bacillota
Latilactobacillus sakei [MKDE]
2433
2518
+
Leu
CAA
[ENA]
¡û
>W1711484956
MKDG01000043
Bacillota
Latilactobacillus curvatus [MKDG]
778
863
+
Leu
CAA
[ENA]
¡û
>W1711485012
MKDI01000009
Bacillota
Latilactobacillus sakei [MKDI]
25694
25609
-
Leu
CAA
[ENA]
¡û
>W1711485063
MKDJ01000020
Bacillota
Latilactobacillus sakei [MKDJ]
1239
1324
+
Leu
CAA
[ENA]
¡û
>W1711485230
MKDR01000002
Bacillota
Latilactobacillus curvatus [MKDR]
759
844
+
Leu
CAA
[ENA]
¡û
>W1711487528
MKGB01000033
Bacillota
Latilactobacillus sakei [MKGB]
1748
1833
+
Leu
CAA
[ENA]
¡û
>C012628
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
452872
452955
+
Leu
CAA
[Ensembl]
¡û
>WENV180643506
OCRP01078985
[OCRP] human gut metagenome; human gut
148
63
-
Leu
CAA
[ENA]
¢þ
>W141228377
BALW01000016
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
25875
25790
-
Leu
CAA
[ENA]
¡û
>W141229061
BAMJ01000070
Bacillota
Latilactobacillus fuchuensis JCM 11249 [BAMJ]
509
594
+
Leu
CAA
[ENA]
¡û
>WENV182538939
OIXV01000649
[OIXV] human gut metagenome; faeces
31734
31649
-
Leu
CAA
[ENA]
¢þ
>C181003658
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
25885
25800
-
Leu
CAA
-
¡û
>C181003711
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1453068
1452983
-
Leu
CAA
-
¡û
>C181044619
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
452557
452642
+
Leu
CAA
-
¡û
>C181066104
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
1624603
1624518
-
Leu
CAA
-
¡û
>C181066171
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1620205
1620120
-
Leu
CAA
-
¡û
>C181071482
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
5636
5721
+
Leu
CAA
-
¡û
>C181113661
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1327575
1327660
+
Leu
CAA
-
¡û
>C181114119
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
639102
639017
-
Leu
CAA
-
¡û
>C181186101
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
1504703
1504618
-
Leu
CAA
-
¡û
>C181227429
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
473675
473760
+
Leu
CAA
-
¡û
>C181227548
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
485030
485115
+
Leu
CAA
-
¡û
>C181227670
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
474038
474123
+
Leu
CAA
-
¡û
>C191004217
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
1544629
1544544
-
Leu
CAA
-
¡û
>C191035501
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
429398
429483
+
Leu
CAA
-
¡û
>C191040486
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
5498
5583
+
Leu
CAA
-
¡û
>C191092637
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
836121
836206
+
Leu
CAA
-
¡û
>C191092700
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
521802
521887
+
Leu
CAA
-
¡û
>C191092820
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
371946
372031
+
Leu
CAA
-
¡û
>C191134893
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
1617812
1617727
-
Leu
CAA
-
¡û
>W09127632
ACLD01000109
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
512
597
+
Leu
CAA
[ENA]
¡û
>W1910180960
BJLN01000019
Bacillota
Latilactobacillus sakei NBRC 3541 [BJLN]
25886
25801
-
Leu
CAA
[ENA]
¡û
>W1910184460
BJOQ01000075
Bacillota
Latilactobacillus curvatus NBRC 15884 [BJOQ]
187
102
-
Leu
CAA
[ENA]
¡û
>W1910471951
FXDK01000007
Bacillota
Latilactobacillus curvatus [FXDK]
619
704
+
Leu
CAA
[ENA]
¡û
>W1910751911
MKDL01000043
Bacillota
Latilactobacillus sakei RI-493 [MKDL]
25294
25209
-
Leu
CAA
[ENA]
¡û
>W1910751951
MKDM01000022
Bacillota
Latilactobacillus sakei RI-496 [MKDM]
3932
3847
-
Leu
CAA
[ENA]
¡û
>W1910751985
MKDN01000033
Bacillota
Latilactobacillus sakei RI-499 [MKDN]
1417
1502
+
Leu
CAA
[ENA]
¡û
>W1910752017
MKDO01000010
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
25919
25834
-
Leu
CAA
[ENA]
¡û
>W1910753035
MKGG01000056
Bacillota
Latilactobacillus sakei RI-516 [MKGG]
1714
1799
+
Leu
CAA
[ENA]
¡û
>W1910753064
MKGH01000042
Bacillota
Latilactobacillus sakei RI-517 [MKGH]
24933
24848
-
Leu
CAA
[ENA]
¡û
>W1911493401
OBHJ01000025
Bacillota
Latilactobacillus sakei J18 [OBHJ]
609
694
+
Leu
CAA
[ENA]
¡û
>W1911493446
OBHK01000032
Bacillota
Latilactobacillus sakei J160x1 [OBHK]
609
694
+
Leu
CAA
[ENA]
¡û
>W1911493467
OBHL01000008
Bacillota
Latilactobacillus sakei J156 [OBHL]
1793
1878
+
Leu
CAA
[ENA]
¡û
>W1911493551
OBHN01000002
Bacillota
Latilactobacillus sakei J112 [OBHN]
609
694
+
Leu
CAA
[ENA]
¡û
>W1911533915
OKRC01000014
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
26013
25928
-
Leu
CAA
[ENA]
¡û
>W1911551519
OVTU01000006
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
1822
1907
+
Leu
CAA
[ENA]
¡û
>W1911706076
QOSE01000022
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
25867
25782
-
Leu
CAA
[ENA]
¡û
>WENV11100315
AEKF01000039
Food metagenome, Jonggazip commercial cabbage kimchi
1695
1780
+
Leu
CAA
[ENA]
¡û
>W1511344716
JRFY01000045
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
611
696
+
Leu
CAA
[ENA]
¡û
>W1511402324
JTJV01000136
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
1761
1846
+
Leu
CAA
[ENA]
¡û
>C161093453
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
483973
484058
+
Leu
CAA
-
¡û
>C161100162
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
578217
578302
+
Leu
CAA
[Ensembl]
¡û
>W121008332
AGBU01000098
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
1704
1789
+
Leu
CAA
[ENA]
¡û
>W1610031753
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
19178
19093
-
Leu
CAA
[ENA]
¡û
>W1610034098
AZDL01000206
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
467
552
+
Leu
CAA
[ENA]
¡û
>W1610034171
AZDN01000015
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
25870
25785
-
Leu
CAA
[ENA]
¡û
>W1610035972
AZEX01000066
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
1734
1819
+
Leu
CAA
[ENA]
¡û
>W1610045583
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
1704
1789
+
Leu
CAA
[ENA]
¡û
>W1610909584
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
1794
1879
+
Leu
CAA
[ENA]
¡û
>W1710028680
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
19178
19093
-
Leu
CAA
[ENA]
¡û
>W1710031225
AZDL01000206
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
467
552
+
Leu
CAA
[ENA]
¡û
>W1710031298
AZDN01000015
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
25870
25785
-
Leu
CAA
[ENA]
¡û
>W1710033011
AZEX01000066
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
1734
1819
+
Leu
CAA
[ENA]
¡û
>W1710042424
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
1704
1789
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK