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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74688 (116 seq.)
>W1710860838
LMDE01000014
Actinomycetota
Nocardioides sp. Root122 [LMDE]
81533
81619
+
Leu
CAG
[ENA]
¡û
>W1710863701
LMFI01000010
Actinomycetota
Nocardioides sp. Root140 [LMFI]
1521767
1521851
+
Leu
CAG
[ENA]
¡û
>W1710864901
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1656555
1656471
-
Leu
CAG
[ENA]
¡û
>W1710867826
LMIP01000011
Actinomycetota
Nocardioides sp. Root79 [LMIP]
944046
943962
-
Leu
CAG
[ENA]
¡û
>W1710868030
LMIT01000012
Actinomycetota
Nocardioides sp. Root240 [LMIT]
154247
154163
-
Leu
CAG
[ENA]
¡û
>W1710874079
LMNH01000004
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
587759
587843
+
Leu
CAG
[ENA]
¡û
>W1710874887
LMNY01000003
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
115769
115685
-
Leu
CAG
[ENA]
¡û
>W1710880870
LMSQ01000002
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
123301
123217
-
Leu
CAG
[ENA]
¡û
>W1710880918
LMSR01000002
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
16627
16543
-
Leu
CAG
[ENA]
¡û
>W1711126744
LUPG01000367
Actinomycetota
Nocardioides sp. REDSEA-S25_B9 [LUPG]
460
376
-
Leu
CAG
[ENA]
¡û
>W1711126758
LUPH01000018
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
6491
6575
+
Leu
CAG
[ENA]
¡û
>W1711126834
LUPI01000100
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
3808
3724
-
Leu
CAG
[ENA]
¡û
>W1711126878
LUPK01000006
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
3808
3724
-
Leu
CAG
[ENA]
¡û
>W1711126953
LUPL01000179
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
909
825
-
Leu
CAG
[ENA]
¡û
>W1711127068
LUPO01000052
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
3810
3726
-
Leu
CAG
[ENA]
¡û
>W1711127146
LUPQ01000141
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
6714
6630
-
Leu
CAG
[ENA]
¡û
>W1711326538
MBFJ01000007
Actinomycetota
Jiangella alba [MBFJ]
24487
24573
+
Leu
CAG
[ENA]
¡û
>W1711793208
MWLL01000012
Actinomycetota
Kineosporia sp. R_H_3 [MWLL]
12491
12405
-
Leu
CAG
[ENA]
¡û
>W1711793308
MWLN01000076
Actinomycetota
Kineosporia sp. A_224 A 224 [MWLN]
1471
1557
+
Leu
CAG
[ENA]
¡û
>W1712084129
NHQT01000005
Actinomycetota
Nocardioides sp. XL1 [NHQT]
11425
11341
-
Leu
CAG
[ENA]
¡û
>W131099071
AOSQ01000035
Actinomycetota
Kocuria sp. UCD-OTCP [AOSQ]
7812
7898
+
Leu
CAG
[ENA]
¡û
>W131182594
ARQM01000014
Actinomycetota
Promicromonospora sukumoe 327MFSha3.1 [ARQM]
27027
26943
-
Leu
CAG
[ENA]
¡û
>C015180
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
32617
32700
+
Leu
CAG
[Ensembl]
¡û
>WENV180000014
CZKA01000013
[CZKA] metagenome; liquid mineral medium
22043
21959
-
Leu
CAG
[ENA]
¢þ
>WENV180000095
CZKB01000027
[CZKB] metagenome; liquid mineral medium
256734
256648
-
Leu
CAG
[ENA]
¢þ
>WENV180345330
OBLM01256040
[OBLM] soil metagenome; soil
108
22
-
Leu
CAG
[ENA]
¢þ
>WENV181223171
OFDC01002552
[OFDC] hot springs metagenome; Water
7106
7022
-
Leu
CAG
[ENA]
¢þ
>WENV181295324
OFHI01020145
[OFHI] soil metagenome; Clay
435
349
-
Leu
CAG
[ENA]
¢þ
>W141220350
AZXT01000001
Actinomycetota
Jiangella gansuensis DSM 44835 [AZXT]
42959
43045
+
Leu
CAG
[ENA]
¡û
>W141277545
JAER01000017
Actinomycetota
Nocardioides sp. J54 [JAER]
69034
69118
+
Leu
CAG
[ENA]
¡û
>WENV170229294
CEQG01098976
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
375
291
-
Leu
CAG
[ENA]
¢þ
>WENV170372999
CETS01155589
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
101
185
+
Leu
CAG
[ENA]
¢þ
>WENV170551690
CXWJ01017735
[CXWJ] wastewater metagenome; activated sludge
2884
2800
-
Leu
CAG
[ENA]
¢þ
>WENV170553953
CXWK01039393
[CXWK] wastewater metagenome; activated sludge
5722
5808
+
Leu
CAG
[ENA]
¢þ
>WENV170728662
LULF01000090
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
3810
3726
-
Leu
CAG
[ENA]
¢þ
>WENV170731965
LULI01008977
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
2186
2270
+
Leu
CAG
[ENA]
¢þ
>WENV170733011
LULJ01003380
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
341
425
+
Leu
CAG
[ENA]
¢þ
>WENV170734250
LULK01002748
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
909
825
-
Leu
CAG
[ENA]
¢þ
>WENV170735171
LULL01000143
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
3808
3724
-
Leu
CAG
[ENA]
¢þ
>WENV170736437
LULM01003357
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
670
754
+
Leu
CAG
[ENA]
¢þ
>WENV170737535
LULO01000489
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
3808
3724
-
Leu
CAG
[ENA]
¢þ
>WENV170739388
LULQ01000667
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
99
15
-
Leu
CAG
[ENA]
¢þ
>WENV170740386
LULR01007709
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
2106
2190
+
Leu
CAG
[ENA]
¢þ
>WENV170741770
LULT01003566
[LULT] marine metagenome; Red Sea water column Station 108 - depth 100m
460
376
-
Leu
CAG
[ENA]
¢þ
>WENV170746466
LULZ01044080
[LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m
323
407
+
Leu
CAG
[ENA]
¢þ
>WENV170758975
LUMS01000715
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
5591
5675
+
Leu
CAG
[ENA]
¢þ
>WENV170760819
LUMU01000299
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
6714
6630
-
Leu
CAG
[ENA]
¢þ
>WENV170761942
LUMW01000154
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
3808
3724
-
Leu
CAG
[ENA]
¢þ
>C181119551
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
29871
29957
+
Leu
CAG
-
¡û
>C191104174
CP033324
Actinomycetota
Nocardioides pantholopis 603 [CP033324]
34782
34868
+
Leu
CAG
-
¡û
>C191150893
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
72707
72791
+
Leu
CAG
-
¡û
>C191158859
CP038267
Actinomycetota
Nocardioides euryhalodurans MMS17-SY117 [CP038267]
2433651
2433567
-
Leu
CAG
-
¡û
>C191159898
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
28490
28574
+
Leu
CAG
-
¡û
>C191182458
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
35913
35997
+
Leu
CAG
-
¡û
>C191186687
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
3771417
3771501
+
Leu
CAG
-
¡û
>C191186990
CP041146
Actinomycetota
Nocardioides humi DCY24 [CP041146]
3193219
3193303
+
Leu
CAG
-
¡û
>W141564496
JIAV01000009
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
197213
197299
+
Leu
CAG
[ENA]
¡û
>W09103269
AAJB01000025
Actinomycetota
Nocardioides sp. JS614 [AAJB]
53124
53040
-
Leu
CAG
[ENA]
¡û
>W141815847
JQJL01000011
Actinomycetota
Nocardioides sp. UNC345MFTsu5.1 [JQJL]
286254
286170
-
Leu
CAG
[ENA]
¡û
>W1910141238
BIFF01000002
Actinomycetota
Nocardioides sp. LS1 [BIFF]
1249601
1249515
-
Leu
CAG
[ENA]
¡û
>W1910181546
BJMC01000016
Actinomycetota
Pimelobacter simplex NBRC 12069 [BJMC]
162493
162409
-
Leu
CAG
[ENA]
¡û
>W1911495871
OBQK01000030
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
4936
5022
+
Leu
CAG
[ENA]
¡û
>W1911672115
QGDD01000005
Actinomycetota
Nocardioides silvaticus CCTCC AB 2018079 [QGDD]
215221
215305
+
Leu
CAG
[ENA]
¡û
>W1911738077
QUAL01000421
Actinomycetota
Jiangella rhizosphaerae NEAU-YY265 [QUAL]
17620
17706
+
Leu
CAG
[ENA]
¡û
>W1911768155
QXGH01000020
Actinomycetota
Nocardioides immobilis CCTCC AB 2017083 [QXGH]
47564
47648
+
Leu
CAG
[ENA]
¡û
>W1911817425
QZMN01000006
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
214967
214881
-
Leu
CAG
[ENA]
¡û
>W1810201558
POAG01000001
Actinomycetota
Nocardioides sp. 616 [POAG]
2327
2241
-
Leu
CAG
[ENA]
¡û
>W1810223836
POTW01000071
Actinomycetota
Jiangella anatolica GTF31 [POTW]
19971
19885
-
Leu
CAG
[ENA]
¡û
>W1810400528
PYGE01000004
Actinomycetota
Haloactinopolyspora alba DSM 45211 [PYGE]
31781
31867
+
Leu
CAG
[ENA]
¡û
>W1810402867
PYHR01000002
Actinomycetota
Serinibacter arcticus PCH200 [PYHR]
2516743
2516827
+
Leu
CAG
[ENA]
¡û
>W1810462722
PZYZ01000004
Actinomycetota
Nocardioides sediminis KCTC 19271 [PZYZ]
72246
72332
+
Leu
CAG
[ENA]
¡û
>W1810503991
QBKO01000003
Actinomycetota
Nocardioides sp. CF167 [QBKO]
222889
222805
-
Leu
CAG
[ENA]
¡û
>W1810539892
QDGZ01000001
Actinomycetota
Nocardioides gansuensis WSJ-1 [QDGZ]
18327
18243
-
Leu
CAG
[ENA]
¡û
>W1810577872
QEOO01000016
Actinomycetota
Nocardioides speluncae YIM ART13 [QEOO]
533233
533319
+
Leu
CAG
[ENA]
¡û
>W1810626167
QHKX01000001
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
751699
751785
+
Leu
CAG
[ENA]
¡û
>W1810705009
QMIG01000008
Actinomycetota
Phytoactinopolyspora halophila YIM 96934 [QMIG]
164
78
-
Leu
CAG
[ENA]
¡û
>W1810756464
QPFD01000006
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
402594
402678
+
Leu
CAG
[ENA]
¡û
>W1810898876
QVAI01000002
Actinomycetota
Jiangella endophytica KE2-3 [QVAI]
411233
411319
+
Leu
CAG
[ENA]
¡û
>C151061319
CP009896
Actinomycetota
Pimelobacter simplex VKM Ac-2033D [CP009896]
60262
60346
+
Leu
CAG
[Ensembl]
¡û
>W1510015456
BBRA01000001
Actinomycetota
Demequina flava NBRC 105854 [BBRA]
1162932
1163016
+
Leu
CAG
[ENA]
¡û
>W1510015695
BBRF01000001
Actinomycetota
Demequina aurantiaca NBRC 106265 [BBRF]
773557
773473
-
Leu
CAG
[ENA]
¡û
>W11125276
ADVI01000013
Actinomycetota
Nocardioidaceae bacterium Broad-1 [ADVI]
53608
53694
+
Leu
CAG
[ENA]
¡û
>W1511540065
JZDQ01000149
Actinomycetota
Nocardioides luteus BAFB [JZDQ]
12125
12039
-
Leu
CAG
[ENA]
¡û
>W1511594761
LBMC01000005
Actinomycetota
Jiangella alkaliphila KCTC 19222 [LBMC]
365883
365969
+
Leu
CAG
[ENA]
¡û
>W1511689997
LFXL01000011
Actinomycetota
Jiangella muralis DSM 45357 [LFXL]
169295
169381
+
Leu
CAG
[ENA]
¡û
>C161082860
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
1358871
1358955
+
Leu
CAG
[Ensembl]
¡û
>W1610049569
BBFC01000105
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
2125
2041
-
Leu
CAG
[ENA]
¡û
>W1610050515
BBFY01000204
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
1057
1141
+
Leu
CAG
[ENA]
¡û
>W1610051043
BBGL01000026
Actinomycetota
Nocardioides aromaticivorans JCM 11674 [BBGL]
3733
3649
-
Leu
CAG
[ENA]
¡û
>W1610051406
BBGV01000774
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
523
607
+
Leu
CAG
[ENA]
¡û
>W1610068466
BCRJ01000006
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
33210
33294
+
Leu
CAG
[ENA]
¡û
>W1610723184
LMDE01000014
Actinomycetota
Nocardioides sp. Root122 [LMDE]
81533
81619
+
Leu
CAG
[ENA]
¡û
>W1610726047
LMFI01000010
Actinomycetota
Nocardioides sp. Root140 [LMFI]
1521767
1521851
+
Leu
CAG
[ENA]
¡û
>W1610727247
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1656555
1656471
-
Leu
CAG
[ENA]
¡û
>W1610730172
LMIP01000011
Actinomycetota
Nocardioides sp. Root79 [LMIP]
944046
943962
-
Leu
CAG
[ENA]
¡û
>W1610730376
LMIT01000012
Actinomycetota
Nocardioides sp. Root240 [LMIT]
154247
154163
-
Leu
CAG
[ENA]
¡û
>W1610736425
LMNH01000004
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
587759
587843
+
Leu
CAG
[ENA]
¡û
>W1610737233
LMNY01000003
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
115769
115685
-
Leu
CAG
[ENA]
¡û
>W1610743216
LMSQ01000002
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
123301
123217
-
Leu
CAG
[ENA]
¡û
>W1610743264
LMSR01000002
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
16627
16543
-
Leu
CAG
[ENA]
¡û
>W1610937858
LUPG01000367
Actinomycetota
Nocardioides sp. REDSEA-S25_B9 [LUPG]
460
376
-
Leu
CAG
[ENA]
¡û
>W1610937872
LUPH01000018
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
6491
6575
+
Leu
CAG
[ENA]
¡û
>W1610937948
LUPI01000100
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
3808
3724
-
Leu
CAG
[ENA]
¡û
>W1610937992
LUPK01000006
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
3808
3724
-
Leu
CAG
[ENA]
¡û
>W1610938067
LUPL01000179
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
909
825
-
Leu
CAG
[ENA]
¡û
>W1610938182
LUPO01000052
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
3810
3726
-
Leu
CAG
[ENA]
¡û
>W1610938260
LUPQ01000141
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
6714
6630
-
Leu
CAG
[ENA]
¡û
>W1710045968
BBFC01000105
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
2125
2041
-
Leu
CAG
[ENA]
¡û
>W1710046914
BBFY01000204
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
1057
1141
+
Leu
CAG
[ENA]
¡û
>W1710047442
BBGL01000026
Actinomycetota
Nocardioides aromaticivorans JCM 11674 [BBGL]
3733
3649
-
Leu
CAG
[ENA]
¡û
>W1710047784
BBGV01000774
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
523
607
+
Leu
CAG
[ENA]
¡û
>W1710065839
BCRJ01000006
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
33210
33294
+
Leu
CAG
[ENA]
¡û
>W1710520322
FNFN01000002
Actinomycetota
Nocardioides sp. YR527 [FNFN]
716149
716063
-
Leu
CAG
[ENA]
¡û
>W1710534304
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
1453619
1453533
-
Leu
CAG
[ENA]
¡û
>W1710537903
FNUC01000004
Actinomycetota
Jiangella alba [FNUC]
1140745
1140659
-
Leu
CAG
[ENA]
¡û
>W1710569419
FOUK01000004
Actinomycetota
Pimelobacter simplex [FOUK]
328681
328765
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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