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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74766 (79 seq.)
>W1710798704
LJTV01000083
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_47 [LJTV]
17244
17158
-
Leu
CAG
[ENA]
¡û
>W1711129826
LUUJ01000101
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
91658
91572
-
Leu
CAG
[ENA]
¡û
>W1711129911
LUUL01000073
Gammaproteobacteria
Methylomonas koyamae [LUUL]
29020
29106
+
Leu
CAG
[ENA]
¡û
>W1711256796
LYSX01000017
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
246492
246578
+
Leu
CAG
[ENA]
¡û
>W1711414018
MGXK01000105
Gammaproteobacteria
Gammaproteobacteria bacterium RBG_16_51_14 [MGXK]
2266
2180
-
Leu
CAG
[ENA]
¡û
>W131156030
AQPB01000037
Gammaproteobacteria
Thioalkalivibrio sp. ALE6 [AQPB]
26362
26276
-
Leu
CAG
[ENA]
¡û
>W131161464
AQXS01000006
Gammaproteobacteria
Thioalkalivibrio sp. AKL6 [AQXS]
51131
51217
+
Leu
CAG
[ENA]
¡û
>W131161699
AQXY01000018
Gammaproteobacteria
Thioalkalivibrio sp. ALE14 [AQXY]
44787
44701
-
Leu
CAG
[ENA]
¡û
>W131161864
AQYC01000005
Gammaproteobacteria
Thioalkalivibrio sp. ALMg9 [AQYC]
127098
127012
-
Leu
CAG
[ENA]
¡û
>W131161999
AQYF01000006
Gammaproteobacteria
Thioalkalivibrio sp. AKL8 [AQYF]
282538
282624
+
Leu
CAG
[ENA]
¡û
>W131170409
ARFM01000018
Gammaproteobacteria
Thioalkalivibrio versutus AL2 [ARFM]
173607
173521
-
Leu
CAG
[ENA]
¡û
>W131173888
ARIA01000014
Gammaproteobacteria
Thioalkalivibrio sp. ALE25 [ARIA]
143084
142998
-
Leu
CAG
[ENA]
¡û
>W131173968
ARIC01000058
Gammaproteobacteria
Thioalkalivibrio sp. ALgr3 [ARIC]
214861
214947
+
Leu
CAG
[ENA]
¡û
>W131174131
ARIG01000005
Gammaproteobacteria
Thioalkalivibrio sp. ALE31 [ARIG]
26270
26184
-
Leu
CAG
[ENA]
¡û
>W131174189
ARIH01000021
Gammaproteobacteria
Thioalkalivibrio sp. ALE28 [ARIH]
106036
105950
-
Leu
CAG
[ENA]
¡û
>W131174249
ARII01000026
Gammaproteobacteria
Thioalkalivibrio sp. ALE9 [ARII]
15902
15988
+
Leu
CAG
[ENA]
¡û
>W131174266
ARIJ01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALE30 [ARIJ]
66343
66257
-
Leu
CAG
[ENA]
¡û
>W131174307
ARIK01000007
Gammaproteobacteria
Thioalkalivibrio sp. ALE27 [ARIK]
37234
37320
+
Leu
CAG
[ENA]
¡û
>W131175103
ARIZ01000020
Gammaproteobacteria
Thioalkalivibrio sp. ALJ24 [ARIZ]
42293
42379
+
Leu
CAG
[ENA]
¡û
>W131175157
ARJA01000026
Gammaproteobacteria
Thioalkalivibrio sp. AKL3 [ARJA]
90340
90254
-
Leu
CAG
[ENA]
¡û
>W131175195
ARJB01000024
Gammaproteobacteria
Thioalkalivibrio sp. AKL9 [ARJB]
96957
97043
+
Leu
CAG
[ENA]
¡û
>W131175350
ARJE01000018
Gammaproteobacteria
Thioalkalivibrio sp. AKL17 [ARJE]
82380
82294
-
Leu
CAG
[ENA]
¡û
>W131175392
ARJF01000015
Gammaproteobacteria
Thioalkalivibrio sp. ALMg11 [ARJF]
128853
128767
-
Leu
CAG
[ENA]
¡û
>W131175421
ARJG01000015
Gammaproteobacteria
Thioalkalivibrio sp. AKL12 [ARJG]
25957
25871
-
Leu
CAG
[ENA]
¡û
>W131175477
ARJH01000049
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus ALJ17 [ARJH]
59901
59987
+
Leu
CAG
[ENA]
¡û
>W131177026
ARKM01000069
Gammaproteobacteria
Thioalkalivibrio sp. ALE23 [ARKM]
405782
405696
-
Leu
CAG
[ENA]
¡û
>W131178048
ARLG01000023
Gammaproteobacteria
Thioalkalivibrio sp. ALE12 [ARLG]
178849
178935
+
Leu
CAG
[ENA]
¡û
>W131178132
ARLI01000044
Gammaproteobacteria
Thioalkalivibrio sp. ALMg2 [ARLI]
24663
24749
+
Leu
CAG
[ENA]
¡û
>W131178249
ARLK01000063
Gammaproteobacteria
Thioalkalivibrio sp. ALMg13-2 [ARLK]
17544
17630
+
Leu
CAG
[ENA]
¡û
>W131178289
ARLL01000057
Gammaproteobacteria
Thioalkalivibrio sp. ALE11 [ARLL]
97673
97587
-
Leu
CAG
[ENA]
¡û
>W131178345
ARLM01000023
Gammaproteobacteria
Thioalkalivibrio sp. ALMg3 [ARLM]
188482
188396
-
Leu
CAG
[ENA]
¡û
>W131178514
ARLQ01000032
Gammaproteobacteria
Thioalkalivibrio sp. ALE16 [ARLQ]
104223
104137
-
Leu
CAG
[ENA]
¡û
>W131178694
ARLT01000020
Gammaproteobacteria
Thioalkalivibrio sp. ALE10 [ARLT]
225298
225384
+
Leu
CAG
[ENA]
¡û
>W131178746
ARLU01000032
Gammaproteobacteria
Thioalkalivibrio sp. ALE20 [ARLU]
97599
97513
-
Leu
CAG
[ENA]
¡û
>W131178810
ARLW01000006
Gammaproteobacteria
Thioalkalivibrio sp. ALE22 [ARLW]
26099
26013
-
Leu
CAG
[ENA]
¡û
>W131178870
ARLX01000023
Gammaproteobacteria
Thioalkalivibrio sp. ALE18 [ARLX]
215124
215210
+
Leu
CAG
[ENA]
¡û
>W131178909
ARLY01000014
Gammaproteobacteria
Thioalkalivibrio sp. ALgr5 [ARLY]
37671
37757
+
Leu
CAG
[ENA]
¡û
>W131178964
ARLZ01000025
Gammaproteobacteria
Thioalkalivibrio sp. ALM2T [ARLZ]
370476
370562
+
Leu
CAG
[ENA]
¡û
>W131179400
ARMJ01000003
Gammaproteobacteria
Thioalkalivibrio sp. AKL7 [ARMJ]
17511
17597
+
Leu
CAG
[ENA]
¡û
>W131179735
ARMQ01000005
Gammaproteobacteria
Thioalkalivibrio sp. AKL10 [ARMQ]
110387
110301
-
Leu
CAG
[ENA]
¡û
>W131180036
ARMV01000028
Gammaproteobacteria
Thioalkalivibrio sp. ALSr1 [ARMV]
216659
216745
+
Leu
CAG
[ENA]
¡û
>W131214701
ATUK01000012
Gammaproteobacteria
Thioalkalivibrio sp. AKL19 [ATUK]
249636
249722
+
Leu
CAG
[ENA]
¡û
>W131214746
ATUL01000005
Gammaproteobacteria
Thioalkalivibrio sp. ALR17-21 [ATUL]
43833
43747
-
Leu
CAG
[ENA]
¡û
>W131221219
AUAG01000008
Gammaproteobacteria
Thioalkalivibrio sp. ALE19 [AUAG]
31991
31905
-
Leu
CAG
[ENA]
¡û
>W131225654
AUDT01000005
Gammaproteobacteria
Thioalkalivibrio sp. ALE17 [AUDT]
25935
25849
-
Leu
CAG
[ENA]
¡û
>W1711767351
MUZR01000040
Gammaproteobacteria
Thioalkalivibrio halophilus [MUZR]
8887
8801
-
Leu
CAG
[ENA]
¡û
>W1711767854
MVAR01000035
Gammaproteobacteria
Thioalkalivibrio versutus [MVAR]
17138
17224
+
Leu
CAG
[ENA]
¡û
>W1711767963
MVBK01000039
Gammaproteobacteria
Thioalkalivibrio denitrificans [MVBK]
25722
25808
+
Leu
CAG
[ENA]
¡û
>w014131
AAOF01000001
Gammaproteobacteria
Nitrococcus mobilis Nb-231 [AAOF]
400538
400455
-
Leu
CAG
[ENA]
¡û
>WENV180084569
MPMD02211178
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
531
617
+
Leu
CAG
[ENA]
¢þ
>WENV181309327
OFIV01003937
[OFIV] marine metagenome; seawater
438
524
+
Leu
CAG
[ENA]
¢þ
>W08000265
ABBZ01000648
Gammaproteobacteria
Beggiatoa sp. PS [ABBZ]
572
487
-
Leu
CAG
[ENA]
¡û
>WENV183512701
OMKS01001160
[OMKS] sediment metagenome; hot spring sediment
9695
9781
+
Leu
CAG
[ENA]
¢þ
>WENV170172873
CEOQ01156374
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
259
173
-
Leu
CAG
[ENA]
¢þ
>WENV170455391
CEVA01107336
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
143
227
+
Leu
CAG
[ENA]
¢þ
>WENV170460332
CEVC01140544
[CEVC] marine metagenome genome assembly TARA_125_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3057
3143
+
Leu
CAG
[ENA]
¢þ
>WENV170680564
LFCJ01014980
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1666
1752
+
Leu
CAG
[ENA]
¢þ
>WENV170683522
LFIK01014674
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
1292
1206
-
Leu
CAG
[ENA]
¢þ
>WENV170704172
LKMJ01024156
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1666
1752
+
Leu
CAG
[ENA]
¢þ
>WENV170875995
MDTC01032974
[MDTC] marine metagenome; seawater
20239
20325
+
Leu
CAG
[ENA]
¢þ
>WENV170916913
MDTE01184849
[MDTE] marine metagenome; seawater
8788
8874
+
Leu
CAG
[ENA]
¢þ
>WENV170962447
MRWF01016065
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
182846
182760
-
Leu
CAG
[ENA]
¢þ
>WENV170963601
MRWG01000351
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
139816
139902
+
Leu
CAG
[ENA]
¢þ
>C181004554
AP018052
Gammaproteobacteria
Thiohalobacter thiocyanaticus FOKN1 [AP018052]
2643206
2643292
+
Leu
CAG
-
¡û
>C181088691
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
2904615
2904529
-
Leu
CAG
-
¡û
>W09113239
ABYM01000003
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGR7 [ABYM]
5403
5489
+
Leu
CAG
[ENA]
¡û
>C09110626
CP001339
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGr7 HL-EbGR7 [CP001339]
976343
976257
-
Leu
CAG
[Ensembl]
¡û
>W1911817829
QZMU01000001
Gammaproteobacteria
Thiohalobacter thiocyanaticus Hrh1 [QZMU]
2648604
2648518
-
Leu
CAG
[ENA]
¡û
>W1810676458
QKMA01000001
Gammaproteobacteria
Thioalkalivibrio sp. ALE21 [QKMA]
103683
103597
-
Leu
CAG
[ENA]
¡û
>C151081590
CP011367
Gammaproteobacteria
Thioalkalivibrio versutus D301 [CP011367]
2361561
2361647
+
Leu
CAG
[Ensembl]
¡û
>C161072141
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
2824338
2824252
-
Leu
CAG
[Ensembl]
¡û
>WENV057001
AACY023279202
Marine microbial communities from Global Ocean Sampling (GOS)
944
856
-
Leu
CAG
[ENA]
>W1610046478
BBCK01000029
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
10521
10435
-
Leu
CAG
[ENA]
¡û
>W1610662661
LJTV01000083
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_47 [LJTV]
17244
17158
-
Leu
CAG
[ENA]
¡û
>W1610940899
LUUJ01000101
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
91658
91572
-
Leu
CAG
[ENA]
¡û
>W1610940984
LUUL01000073
Gammaproteobacteria
Methylomonas koyamae [LUUL]
29020
29106
+
Leu
CAG
[ENA]
¡û
>W1610949748
LVEG01000004
Gammaproteobacteria
Halofilum ochraceum XJ16 [LVEG]
138292
138206
-
Leu
CAG
[ENA]
¡û
>W1611019821
LYSX01000017
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
246492
246578
+
Leu
CAG
[ENA]
¡û
>W1710043274
BBCK01000029
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
10521
10435
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK