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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74969 (8 seq.)
>W141401165
JDSS02000018
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
81165
81079
-
Leu
CAA
[ENA]
¡û
>W141401195
JDST02000033
Betaproteobacteria
Candidatus Accumulibacter cognatus sp. SK-02 [JDST]
52894
52980
+
Leu
CAA
[ENA]
¡û
>W1511592963
LBIV01000014
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
18265
18351
+
Leu
CAA
[ENA]
¡û
>W1610506442
FLQX01000162
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
5841
5755
-
Leu
CAA
[ENA]
¡û
>WENV079771
AATN01000388
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
3592
3506
-
Leu
CAA
[ENA]
>WENV079951
AATO01000005
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
30938
31024
+
Leu
CAA
[ENA]
>WENV080047
AATO01002116
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
434
348
-
Leu
CAA
[ENA]
>W1710498945
FLQX01000162
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
5841
5755
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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