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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74992 (36 seq.)
>W1711187560
LWPO01000089
Gammaproteobacteria
Hafnia sp. HMSC23F03 [LWPO]
31811
31897
+
Leu
TAA
[ENA]
¡û
>W1712109960
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
2923566
2923652
+
Leu
TAA
[ENA]
¡û
>WENV180137753
OATP01000390
[OATP] human gut metagenome; faeces
6424
6510
+
Leu
TAA
[ENA]
¢þ
>WENV180143641
OATY01000020
[OATY] human gut metagenome; faeces
102044
101958
-
Leu
TAA
[ENA]
¢þ
>WENV180211808
OBAM01027038
[OBAM] human gut metagenome; human gut
842
756
-
Leu
TAA
[ENA]
¢þ
>WENV183357121
OLXF01008751
[OLXF] human gut metagenome; feces
2844
2930
+
Leu
TAA
[ENA]
¢þ
>W141350065
JCKH01000018
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
32803
32889
+
Leu
TAA
[ENA]
¡û
>C181002152
AP017469
Gammaproteobacteria
Hafnia sp. CBA7124 [AP017469]
1780152
1780238
+
Leu
TAA
-
¡û
>C181055070
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
1763823
1763909
+
Leu
TAA
-
¡û
>C191008091
CP004083
Gammaproteobacteria
Enterobacteriaceae bacterium bta3-1 [CP004083]
904739
904825
+
Leu
TAA
-
¡û
>C191152019
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
1816512
1816598
+
Leu
TAA
-
¡û
>W141710508
JMPK01000047
Gammaproteobacteria
Hafnia alvei ATCC 13337 [JMPK]
54946
55032
+
Leu
TAA
[ENA]
¡û
>W1910211904
FMIQ01000006
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
182096
182182
+
Leu
TAA
[ENA]
¡û
>W1911179136
NQMS01000001
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
819148
819234
+
Leu
TAA
[ENA]
¡û
>W1911397639
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
3794216
3794130
-
Leu
TAA
[ENA]
¡û
>W1810032553
BGWW01000006
Gammaproteobacteria
Escherichia coli TUM18717 [BGWW]
49928
50014
+
Leu
TAA
[ENA]
¡û
>W1810758386
QPIR01000112
Gammaproteobacteria
Hafnia paralvei C2 [QPIR]
115
29
-
Leu
TAA
[ENA]
¡û
>W1810758452
QPIS01000111
Gammaproteobacteria
Hafnia paralvei C3 [QPIS]
115
29
-
Leu
TAA
[ENA]
¡û
>W1810758511
QPIT01000070
Gammaproteobacteria
Hafnia paralvei C5 [QPIT]
115
29
-
Leu
TAA
[ENA]
¡û
>W1810758572
QPIU01000070
Gammaproteobacteria
Hafnia paralvei C8 [QPIU]
33345
33431
+
Leu
TAA
[ENA]
¡û
>W1810758627
QPIV01000070
Gammaproteobacteria
Hafnia paralvei C9 [QPIV]
115
29
-
Leu
TAA
[ENA]
¡û
>W1810784875
QRAZ01002945
Gammaproteobacteria
Hafnia paralvei C10 [QRAZ]
115
29
-
Leu
TAA
[ENA]
¡û
>C151057765
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
1950014
1950100
+
Leu
TAA
[Ensembl]
¡û
>W11113849
ADCU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium 9_2_54FAA [ADCU]
916664
916750
+
Leu
TAA
[ENA]
¡û
>W1511399573
JTET01000038
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
11183
11269
+
Leu
TAA
[ENA]
¡û
>W1511399647
JTEU02000028
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
33507
33421
-
Leu
TAA
[ENA]
¡û
>W1511474604
JWBZ01000157
Gammaproteobacteria
Hafnia paralvei 1133_RAQU [JWBZ]
29609
29523
-
Leu
TAA
[ENA]
¡û
>W1511478134
JWGZ01000025
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
7501
7587
+
Leu
TAA
[ENA]
¡û
>W1511586364
LAZF01000010
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
286711
286625
-
Leu
TAA
[ENA]
¡û
>W1511586462
LAZG01000020
Gammaproteobacteria
Hafnia alvei ATCC 29926 [LAZG]
177132
177046
-
Leu
TAA
[ENA]
¡û
>C161065262
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
3761672
3761586
-
Leu
TAA
-
¡û
>C161074177
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
1910967
1911053
+
Leu
TAA
-
¡û
>C161086855
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
4302816
4302730
-
Leu
TAA
-
¡û
>W121008415
AGCI01000084
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
52052
52138
+
Leu
TAA
[ENA]
¡û
>W1610994675
LXET01000044
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
29436
29350
-
Leu
TAA
[ENA]
¡û
>W1610994946
LXEX01000005
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
153052
152966
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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