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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.75421 (67 seq.)
>W1711724111
MTPX01000006
Actinomycetota
Actinomyces ruminis CtC 72 [MTPX]
39462
39548
+
Leu
CAG
[ENA]
¡û
>W1711774047
MVIV01000002
Actinomycetota
Actinomyces gaoshouyii pika_113 [MVIV]
341383
341469
+
Leu
CAG
[ENA]
¡û
>W1711774123
MVIW01000013
Actinomycetota
Actinomyces denticolens [MVIW]
54972
54886
-
Leu
CAG
[ENA]
¡û
>C171108505
CP020468
Actinomycetota
Actinomyces gaoshouyii pika_114 [CP020468]
25034
25120
+
Leu
CAG
-
¡û
>W131221352
AUAK01000001
Actinomycetota
Actinomyces slackii ATCC 49928 [AUAK]
113298
113384
+
Leu
CAG
[ENA]
¡û
>W131222737
AUBN01000004
Actinomycetota
Actinomyces gerencseriae DSM 6844 [AUBN]
193467
193551
+
Leu
CAG
[ENA]
¡û
>W141024094
AKGF01000017
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
6644
6558
-
Leu
CAG
[ENA]
¡û
>WENV180734456
ODGZ01009064
[ODGZ] human metagenome; G_DNA_Supragingival plaque
835
919
+
Leu
CAG
[ENA]
¢þ
>WENV180738970
ODHD01001793
[ODHD] human metagenome; G_DNA_Supragingival plaque
4549
4633
+
Leu
CAG
[ENA]
¢þ
>WENV180750963
ODHS01014756
[ODHS] human metagenome; G_DNA_Supragingival plaque
2211
2127
-
Leu
CAG
[ENA]
¢þ
>WENV180778449
ODIM01007215
[ODIM] human metagenome; G_DNA_Supragingival plaque
2121
2037
-
Leu
CAG
[ENA]
¢þ
>WENV180781779
ODIP01003625
[ODIP] human metagenome; G_DNA_Supragingival plaque
2139
2055
-
Leu
CAG
[ENA]
¢þ
>WENV180786633
ODIS01000018
[ODIS] human metagenome; G_DNA_Supragingival plaque
42573
42657
+
Leu
CAG
[ENA]
¢þ
>WENV180801057
ODJD01006630
[ODJD] human metagenome; G_DNA_Supragingival plaque
663
747
+
Leu
CAG
[ENA]
¢þ
>WENV180804696
ODJG01009500
[ODJG] human metagenome; G_DNA_Supragingival plaque
2138
2054
-
Leu
CAG
[ENA]
¢þ
>WENV180813989
ODJO01004708
[ODJO] human metagenome; G_DNA_Supragingival plaque
4535
4619
+
Leu
CAG
[ENA]
¢þ
>WENV180824425
ODJX01006467
[ODJX] human metagenome; G_DNA_Supragingival plaque
114
30
-
Leu
CAG
[ENA]
¢þ
>WENV180842562
ODKM01058337
[ODKM] human metagenome; G_DNA_Buccal mucosa
222
306
+
Leu
CAG
[ENA]
¢þ
>WENV180843706
ODKN01008736
[ODKN] human metagenome; G_DNA_Supragingival plaque
2270
2186
-
Leu
CAG
[ENA]
¢þ
>WENV180889057
ODMN01010858
[ODMN] human metagenome; G_DNA_Supragingival plaque
1991
1907
-
Leu
CAG
[ENA]
¢þ
>WENV180889138
ODMN01014184
[ODMN] human metagenome; G_DNA_Supragingival plaque
12
96
+
Leu
CAG
[ENA]
¢þ
>WENV180921969
ODTJ01000889
[ODTJ] human metagenome; G_DNA_Supragingival plaque
14730
14814
+
Leu
CAG
[ENA]
¢þ
>WENV180924364
ODTK01003745
[ODTK] human metagenome; G_DNA_Supragingival plaque
4252
4336
+
Leu
CAG
[ENA]
¢þ
>WENV180927656
ODTM01002123
[ODTM] human metagenome; G_DNA_Supragingival plaque
2336
2420
+
Leu
CAG
[ENA]
¢þ
>WENV180933764
ODTR01002204
[ODTR] human metagenome; G_DNA_Supragingival plaque
1358
1442
+
Leu
CAG
[ENA]
¢þ
>WENV180944582
ODUC01023652
[ODUC] human metagenome; G_DNA_Supragingival plaque
2118
2034
-
Leu
CAG
[ENA]
¢þ
>WENV180958476
ODUL01005877
[ODUL] human metagenome; G_DNA_Supragingival plaque
2126
2042
-
Leu
CAG
[ENA]
¢þ
>WENV180964635
ODUO01007540
[ODUO] human metagenome; G_DNA_Supragingival plaque
6
90
+
Leu
CAG
[ENA]
¢þ
>WENV180973625
ODUW01010139
[ODUW] human metagenome; G_DNA_Supragingival plaque
3025
2941
-
Leu
CAG
[ENA]
¢þ
>WENV180981286
ODVE01013473
[ODVE] human metagenome; G_DNA_Supragingival plaque
2254
2170
-
Leu
CAG
[ENA]
¢þ
>WENV180982896
ODVF01001333
[ODVF] human metagenome; G_DNA_Supragingival plaque
12126
12210
+
Leu
CAG
[ENA]
¢þ
>WENV180986962
ODVK01002493
[ODVK] human metagenome; G_DNA_Supragingival plaque
2251
2167
-
Leu
CAG
[ENA]
¢þ
>WENV181008953
ODWE01020766
[ODWE] human metagenome; G_DNA_Supragingival plaque
18
102
+
Leu
CAG
[ENA]
¢þ
>WENV181019755
ODWU01013159
[ODWU] human metagenome; G_DNA_Supragingival plaque
277
361
+
Leu
CAG
[ENA]
¢þ
>WENV181029828
ODXF01005454
[ODXF] human metagenome; G_DNA_Supragingival plaque
361
445
+
Leu
CAG
[ENA]
¢þ
>WENV181050343
ODYD01014101
[ODYD] human metagenome; G_DNA_Supragingival plaque
2176
2260
+
Leu
CAG
[ENA]
¢þ
>WENV181050360
ODYD01014811
[ODYD] human metagenome; G_DNA_Supragingival plaque
11
95
+
Leu
CAG
[ENA]
¢þ
>WENV181063372
ODYP01000530
[ODYP] human metagenome; G_DNA_Supragingival plaque
8681
8597
-
Leu
CAG
[ENA]
¢þ
>WENV181070614
OEAE01004074
[OEAE] human metagenome; G_DNA_Supragingival plaque
2265
2181
-
Leu
CAG
[ENA]
¢þ
>WENV181076967
OEAP01019164
[OEAP] human metagenome; G_DNA_Supragingival plaque
2015
1931
-
Leu
CAG
[ENA]
¢þ
>WENV181080170
OEAS01030195
[OEAS] human metagenome; G_DNA_Supragingival plaque
5
89
+
Leu
CAG
[ENA]
¢þ
>WENV181083619
OEAV01014365
[OEAV] human metagenome; G_DNA_Supragingival plaque
2280
2196
-
Leu
CAG
[ENA]
¢þ
>WENV181091180
OEBC01016128
[OEBC] human metagenome; G_DNA_Supragingival plaque
11
95
+
Leu
CAG
[ENA]
¢þ
>WENV181107554
OEEI01011548
[OEEI] human metagenome; G_DNA_Supragingival plaque
2189
2105
-
Leu
CAG
[ENA]
¢þ
>WENV181143731
OEHM01007268
[OEHM] human metagenome; G_DNA_Supragingival plaque
2185
2101
-
Leu
CAG
[ENA]
¢þ
>WENV181146274
OEHQ01002624
[OEHQ] human metagenome; G_DNA_Supragingival plaque
2236
2152
-
Leu
CAG
[ENA]
¢þ
>WENV181152906
OEIA01009595
[OEIA] human metagenome; G_DNA_Supragingival plaque
2252
2168
-
Leu
CAG
[ENA]
¢þ
>WENV181156512
OEIE01024721
[OEIE] human metagenome; G_DNA_Supragingival plaque
287
203
-
Leu
CAG
[ENA]
¢þ
>WENV181180956
OEJU01002453
[OEJU] human metagenome; G_DNA_Supragingival plaque
2256
2172
-
Leu
CAG
[ENA]
¢þ
>WENV181182511
OEJV01013504
[OEJV] human metagenome; G_DNA_Supragingival plaque
1985
1901
-
Leu
CAG
[ENA]
¢þ
>C181003368
AP017896
Actinomycetota
Actinomyces sp. Chiba101 [AP017896]
23938
24024
+
Leu
CAG
-
¡û
>C181148269
CP027236
Actinomycetota
Actinomyces sp. oral taxon 897 F0631 [CP027236]
2388466
2388382
-
Leu
CAG
-
¡û
>C191030361
CP025228
Actinomycetota
Actinomyces qiguomingii 410 [CP025228]
29667
29753
+
Leu
CAG
-
¡û
>C191164706
CP039292
Actinomycetota
Actinomyces procaprae dk561 [CP039292]
28243
28329
+
Leu
CAG
-
¡û
>C191208276
LR134350
Actinomycetota
Actinomyces howellii NCTC11636 [LR134350]
1977845
1977761
-
Leu
CAG
-
¡û
>C191208928
LR134363
Actinomycetota
Actinomyces slackii NCTC11923 [LR134363]
692424
692509
+
Leu
CAG
-
¡û
>W141779282
JONS01000006
Actinomycetota
Actinomyces israelii DSM 43320 [JONS]
15429
15343
-
Leu
CAG
[ENA]
¡û
>W1910281477
FQTT01000015
Actinomycetota
Actinomyces glycerinitolerans [FQTT]
120803
120889
+
Leu
CAG
[ENA]
¡û
>W1810238739
PPPL01000083
Actinomycetota
Actinomyces qiguomingii 553 [PPPL]
75938
76024
+
Leu
CAG
[ENA]
¡û
>W1810705129
QMIN01000021
Actinomycetota
Actinomyces sp. Z5 [QMIN]
1765
1679
-
Leu
CAG
[ENA]
¡û
>W1810705211
QMIO01000048
Actinomycetota
Actinomyces sp. Z3 [QMIO]
14510
14596
+
Leu
CAG
[ENA]
¡û
>W121081424
AKFT01000045
Actinomycetota
Actinomyces massiliensis F0489 [AKFT]
8211
8127
-
Leu
CAG
[ENA]
¡û
>W121084602
AKIO01000009
Actinomycetota
Actinomyces massiliensis 4401292 [AKIO]
37710
37626
-
Leu
CAG
[ENA]
¡û
>W1710082823
BDIO01000006
Actinomycetota
Actinomyces denticolens [BDIO]
1298139
1298053
-
Leu
CAG
[ENA]
¡û
>W1710523250
FNHU01000015
Actinomycetota
Actinomyces ruminicola [FNHU]
51519
51433
-
Leu
CAG
[ENA]
¡û
>W1710524129
FNIM01000002
Actinomycetota
Actinomyces ruminicola [FNIM]
43993
43907
-
Leu
CAG
[ENA]
¡û
>W1710587388
FQYL01000006
Actinomycetota
Actinomyces denticolens [FQYL]
69719
69805
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK