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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7543 (50 seq.)
>W1710897051
LNHS01000020
Gammaproteobacteria
Providencia stuartii [LNHS]
21696
21604
-
Ser
GCT
[ENA]
¡û
>W131238055
AUUA01000013
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [AUUA]
47744
47836
+
Ser
GCT
[ENA]
¡û
>W1711513368
MLFQ01000525
Gammaproteobacteria
Mixta gaviniae [MLFQ]
102
10
-
Ser
GCT
[ENA]
¡û
>W1711684346
MSAA01000003
Gammaproteobacteria
Providencia stuartii [MSAA]
21821
21729
-
Ser
GCT
[ENA]
¡û
>W131095439
AOOO01000034
Gammaproteobacteria
Dickeya sp. MK7 [AOOO]
20967
20875
-
Ser
GCT
[ENA]
¡û
>W131187852
ASAB01000007
Gammaproteobacteria
Pectobacterium atrosepticum CFBP 6276 [ASAB]
142350
142442
+
Ser
GCT
[ENA]
¡û
>W131211333
ATMI01000055
Gammaproteobacteria
Tatumella saanichensis NML 06-3099 [ATMI]
8679
8587
-
Ser
GCT
[ENA]
¡û
>C171039370
CP015579
Gammaproteobacteria
Tatumella citrea DSM 13699 [CP015579]
1048867
1048959
+
Ser
GCT
-
¡û
>C171039375
CP015579
Gammaproteobacteria
Tatumella citrea DSM 13699 [CP015579]
1049604
1049696
+
Ser
GCT
-
¡û
>WENV180852810
ODKW01006707
[ODKW] human metagenome; G_DNA_Tongue dorsum
3097
3189
+
Ser
GCT
[ENA]
¢þ
>W08006446
ABJD02000001
Gammaproteobacteria
Providencia stuartii ATCC 25827 [ABJD]
279
190
-
Ser
GCT
[ENA]
¡û
>W141221488
AZYZ01000041
Gammaproteobacteria
Providencia alcalifaciens PAL-3 [AZYZ]
228974
229066
+
Ser
GCT
[ENA]
¡û
>W141254027
CBST010000138
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae France [CBST]
3009
2917
-
Ser
GCT
[ENA]
¡û
>W141254336
CBSY010000155
Gammaproteobacteria
Xenorhabdus bovienii str. kraussei Quebec [CBSY]
21098
21006
-
Ser
GCT
[ENA]
¡û
>WENV182621534
OJKJ01000060
[OJKJ] metagenome; faeces
21423
21331
-
Ser
GCT
[ENA]
¢þ
>WENV170700402
LIDZ01013414
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
100603
100695
+
Ser
GCT
[ENA]
¢þ
>C181025663
CP017453
Gammaproteobacteria
Dickeya solani D s0432-1 [CP017453]
3999362
3999454
+
Ser
GCT
-
¡û
>C181109332
CP024956
Gammaproteobacteria
Pectobacterium atrosepticum 36A [CP024956]
3730424
3730332
-
Ser
GCT
-
¡û
>C181215531
LS483470
Gammaproteobacteria
Leminorella richardii NCTC12151 [LS483470]
1161708
1161800
+
Ser
GCT
-
¡û
>C191023343
CP023009
Gammaproteobacteria
Lonsdalea britannica 477 [CP023009]
230373
230281
-
Ser
GCT
-
¡û
>C191049093
CP026980
Gammaproteobacteria
Pectobacterium parmentieri IFB5441 [CP026980]
1159102
1159194
+
Ser
GCT
-
¡û
>C191122685
CP034276
Gammaproteobacteria
Pectobacterium versatile 14A [CP034276]
3721841
3721749
-
Ser
GCT
-
¡û
>W09112463
ABXW01000004
Gammaproteobacteria
Providencia alcalifaciens DSM 30120 [ABXW]
351610
351702
+
Ser
GCT
[ENA]
¡û
>W141710653
JMPN01000008
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [JMPN]
47681
47773
+
Ser
GCT
[ENA]
¡û
>W1910643588
LUSR01000030
Gammaproteobacteria
Lonsdalea populi CFCC 12786 [LUSR]
11762
11854
+
Ser
GCT
[ENA]
¡û
>W1910643698
LUST01000037
Gammaproteobacteria
Lonsdalea populi CFCC 13912 [LUST]
29672
29580
-
Ser
GCT
[ENA]
¡û
>W1910644058
LUSZ01000079
Gammaproteobacteria
Lonsdalea populi CFCC 11263 [LUSZ]
104
12
-
Ser
GCT
[ENA]
¡û
>W1910803892
MTCG01000060
Gammaproteobacteria
Tatumella sp. OPLPL6 [MTCG]
232254
232162
-
Ser
GCT
[ENA]
¡û
>W1910919009
NIBV01000002
Gammaproteobacteria
Xenorhabdus szentirmaii DSM 16338 [NIBV]
235340
235432
+
Ser
GCT
[ENA]
¡û
>W1911654287
QDKH01000022
Gammaproteobacteria
Brenneria sp. CFCC 11842 [QDKH]
92411
92503
+
Ser
GCT
[ENA]
¡û
>W1911701651
QNUT01000017
Gammaproteobacteria
Dickeya lacustris S29 [QNUT]
117210
117302
+
Ser
GCT
[ENA]
¡û
>W1911811880
QZDH01000046
Gammaproteobacteria
Pectobacterium carotovorum S1.15.11.2D [QZDH]
66437
66529
+
Ser
GCT
[ENA]
¡û
>W1911812047
QZDL01000076
Gammaproteobacteria
Pectobacterium versatile S4.16.03.3K [QZDL]
120
28
-
Ser
GCT
[ENA]
¡û
>W1911812089
QZDN01000002
Gammaproteobacteria
Dickeya dianthicola S4.16.03.P2.4 [QZDN]
112257
112349
+
Ser
GCT
[ENA]
¡û
>W1810065186
PDVY01000009
Gammaproteobacteria
Pectobacterium versatile PB69 [PDVY]
22076
21984
-
Ser
GCT
[ENA]
¡û
>W1810257695
PQJX01000001
Gammaproteobacteria
Pantoea sp. PSNIH5 [PQJX]
22571
22479
-
Ser
GCT
[ENA]
¡û
>W1810625573
QHJV01000042
Gammaproteobacteria
Pectobacterium aquaticum A101-S19-F16 [QHJV]
5936
6028
+
Ser
GCT
[ENA]
¡û
>C151068478
CP010423
Gammaproteobacteria
Pragia fontium 24613 [CP010423]
1346546
1346638
+
Ser
GCT
[Ensembl]
¡û
>W1511390727
JSYH01000085
Gammaproteobacteria
Dickeya chrysanthemi L11 [JSYH]
6988
7080
+
Ser
GCT
[ENA]
¡û
>W1511436404
JUJR01000008
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum BC T2 [JUJR]
21833
21741
-
Ser
GCT
[ENA]
¡û
>W1511510158
JXRS01000071
Gammaproteobacteria
Dickeya solani IFB 0099 [JXRS]
262507
262415
-
Ser
GCT
[ENA]
¡û
>W1511510169
JXRS01000072
Gammaproteobacteria
Dickeya solani IFB 0099 [JXRS]
5096
5004
-
Ser
GCT
[ENA]
¡û
>W1511510173
JXRS01000073
Gammaproteobacteria
Dickeya solani IFB 0099 [JXRS]
4846
4754
-
Ser
GCT
[ENA]
¡û
>W1511705451
LGRF01000009
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense BD255 [LGRF]
22013
21921
-
Ser
GCT
[ENA]
¡û
>C121013439
CP003488
Gammaproteobacteria
Providencia stuartii MRSN 2154 [CP003488]
1219531
1219439
-
Ser
GCT
[Ensembl]
¡û
>W1610419455
FIZD01000006
Gammaproteobacteria
Providencia heimbachae [FIZD]
356107
356199
+
Ser
GCT
[ENA]
¡û
>W1610548305
JWLT01000005
Gammaproteobacteria
Dickeya solani [JWLT]
113003
113095
+
Ser
GCT
[ENA]
¡û
>W1610757455
LNHS01000020
Gammaproteobacteria
Providencia stuartii [LNHS]
21696
21604
-
Ser
GCT
[ENA]
¡û
>W1710419191
FIZD01000006
Gammaproteobacteria
Providencia heimbachae [FIZD]
356107
356199
+
Ser
GCT
[ENA]
¡û
>W1710651681
JWLT01000005
Gammaproteobacteria
Dickeya solani [JWLT]
113003
113095
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK