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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.75961 (116 seq.)
>W1710914134
LNTC01000016
Campylobacterota
Aliarcobacter cryaerophilus [LNTC]
12903
12817
-
Leu
TAA
[ENA]
¡û
>W1711055310
LRUQ01000095
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
36256
36342
+
Leu
TAA
[ENA]
¡û
>W1711055336
LRUR01000066
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
148078
148164
+
Leu
TAA
[ENA]
¡û
>W1711055355
LRUS01000081
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
14704
14618
-
Leu
TAA
[ENA]
¡û
>W1711055390
LRUT01000085
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
45968
46054
+
Leu
TAA
[ENA]
¡û
>W1711055423
LRUU01000083
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
146823
146909
+
Leu
TAA
[ENA]
¡û
>W1711055451
LRUV01000062
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
76986
76900
-
Leu
TAA
[ENA]
¡û
>W1711055473
LRUW01000048
Campylobacterota
Aliarcobacter skirrowii [LRUW]
69962
70048
+
Leu
TAA
[ENA]
¡û
>W1711055505
LRUX01000034
Campylobacterota
Aliarcobacter skirrowii [LRUX]
69081
68995
-
Leu
TAA
[ENA]
¡û
>W1711055541
LRUY01000083
Campylobacterota
Aliarcobacter skirrowii [LRUY]
54647
54733
+
Leu
TAA
[ENA]
¡û
>W1711055571
LRUZ01000040
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
36636
36722
+
Leu
TAA
[ENA]
¡û
>WENV180283782
OBID01003072
[OBID] metagenome; sludge
4
90
+
Leu
TAA
[ENA]
¢þ
>WENV181732376
OGQD01029262
[OGQD] human gut metagenome; faeces
1087
1001
-
Leu
TAA
[ENA]
¢þ
>WENV181844209
OGVV01021476
[OGVV] freshwater metagenome; freshwater
630
544
-
Leu
TAA
[ENA]
¢þ
>WENV181844750
OGVW01025957
[OGVW] freshwater metagenome; freshwater
370
456
+
Leu
TAA
[ENA]
¢þ
>C08000252
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1541706
1541792
+
Leu
TAA
[Ensembl]
¡û
>C08000261
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
2103540
2103626
+
Leu
TAA
[Ensembl]
¡û
>W141274752
JABW01000015
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
9751
9837
+
Leu
TAA
[ENA]
¡û
>W141274769
JABW01000025
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
9551
9637
+
Leu
TAA
[ENA]
¡û
>W141289999
JARU01000018
Campylobacterota
Aliarcobacter lanthieri AF1440 [JARU]
11404
11490
+
Leu
TAA
[ENA]
¡û
>W141290059
JARV01000016
Campylobacterota
Aliarcobacter lanthieri AF1581 [JARV]
10972
11058
+
Leu
TAA
[ENA]
¡û
>W141291680
JATO01000021
Campylobacterota
Aliarcobacter lanthieri AF1430 [JATO]
126743
126657
-
Leu
TAA
[ENA]
¡û
>WENV170554711
CXWK01086886
[CXWK] wastewater metagenome; activated sludge
873
959
+
Leu
TAA
[ENA]
¢þ
>WENV170609802
FUWD011504476
[FUWD] metagenome; unknown
440
354
-
Leu
TAA
[ENA]
¢þ
>WENV170690889
LFRM01368739
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1098
1184
+
Leu
TAA
[ENA]
¢þ
>C181197044
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2622714
2622628
-
Leu
TAA
-
¡û
>C181225249
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1541700
1541786
+
Leu
TAA
-
¡û
>C181225258
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
2103533
2103619
+
Leu
TAA
-
¡û
>C191084429
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
1864438
1864524
+
Leu
TAA
-
¡û
>C191084547
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
1744026
1744112
+
Leu
TAA
-
¡û
>C191084584
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
1758530
1758616
+
Leu
TAA
-
¡û
>C191084589
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2405578
2405492
-
Leu
TAA
-
¡û
>C191095049
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
1701514
1701600
+
Leu
TAA
-
¡û
>C191095095
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
1752891
1752977
+
Leu
TAA
-
¡û
>C191122824
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
1662949
1663035
+
Leu
TAA
-
¡û
>C191147183
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
2427624
2427538
-
Leu
TAA
-
¡û
>C191147212
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
931986
931900
-
Leu
TAA
-
¡û
>C191178278
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
2057975
2058061
+
Leu
TAA
-
¡û
>C191178303
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1030363
1030277
-
Leu
TAA
-
¡û
>C141005630
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1496097
1496183
+
Leu
TAA
[Ensembl]
¡û
>C141005639
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1984539
1984625
+
Leu
TAA
[Ensembl]
¡û
>W1910810871
MUXE01000015
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
43868
43782
-
Leu
TAA
[ENA]
¡û
>W1910810929
MUXF01000016
Campylobacterota
Arcobacter lacus RW43-9 [MUXF]
57716
57630
-
Leu
TAA
[ENA]
¡û
>W1910810937
MUXF01000019
Campylobacterota
Arcobacter lacus RW43-9 [MUXF]
222873
222959
+
Leu
TAA
[ENA]
¡û
>W1911200216
NREO01000005
Campylobacterota
Arcobacter suis CECT7833 [NREO]
140543
140629
+
Leu
TAA
[ENA]
¡û
>W1911200248
NREO01000022
Campylobacterota
Arcobacter suis CECT7833 [NREO]
21429
21515
+
Leu
TAA
[ENA]
¡û
>W1911200282
NREP01000009
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
148008
147922
-
Leu
TAA
[ENA]
¡û
>W1911424339
NXGC01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
346959
346873
-
Leu
TAA
[ENA]
¡û
>W1911424372
NXGD01000003
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
119362
119276
-
Leu
TAA
[ENA]
¡û
>W1911424417
NXGE01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 10210 [NXGE]
434575
434661
+
Leu
TAA
[ENA]
¡û
>W1911424565
NXGH01000024
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
5719
5805
+
Leu
TAA
[ENA]
¡û
>W1911424578
NXGI01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 9065 [NXGI]
317453
317367
-
Leu
TAA
[ENA]
¡û
>W1911424633
NXGJ01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 9861 [NXGJ]
219339
219253
-
Leu
TAA
[ENA]
¡û
>W1911424664
NXGK01000006
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
35860
35946
+
Leu
TAA
[ENA]
¡û
>W1911426148
NXIC01000002
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
83103
83017
-
Leu
TAA
[ENA]
¡û
>W1911426205
NXID01000048
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
54960
55046
+
Leu
TAA
[ENA]
¡û
>W1911426320
NXIG01000004
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
205183
205097
-
Leu
TAA
[ENA]
¡û
>W1911426390
NXIH01000017
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
34863
34949
+
Leu
TAA
[ENA]
¡û
>W1911426406
NXII01000001
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
130604
130690
+
Leu
TAA
[ENA]
¡û
>W1911426420
NXII01000005
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
122934
122848
-
Leu
TAA
[ENA]
¡û
>W1911426456
NXIJ01000001
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
50915
51001
+
Leu
TAA
[ENA]
¡û
>W1911426492
NXIJ01000032
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
26282
26196
-
Leu
TAA
[ENA]
¡û
>W1911576109
PDJT01000032
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
43825
43739
-
Leu
TAA
[ENA]
¡û
>W1911576228
PDJW01000001
Campylobacterota
Malaciobacter mytili T234 [PDJW]
30058
30144
+
Leu
TAA
[ENA]
¡û
>W1911576403
PDJZ01000005
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
148098
148184
+
Leu
TAA
[ENA]
¡û
>W1911576415
PDJZ01000013
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
59473
59559
+
Leu
TAA
[ENA]
¡û
>W1911576458
PDKB01000021
Campylobacterota
Aliarcobacter vitoriensis CECT 9230 [PDKB]
32203
32117
-
Leu
TAA
[ENA]
¡û
>W1911576721
PDKH01000003
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
228083
228169
+
Leu
TAA
[ENA]
¡û
>W1911576770
PDKI01000015
Campylobacterota
Arcobacter sp. CECT 9188 [PDKI]
32411
32325
-
Leu
TAA
[ENA]
¡û
>W1911576801
PDKJ01000013
Campylobacterota
Halarcobacter ebronensis CECT 8993 [PDKJ]
61972
62058
+
Leu
TAA
[ENA]
¡û
>W1911576961
PDKN01000002
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
160789
160703
-
Leu
TAA
[ENA]
¡û
>W1911746046
QVQX01000007
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
14413
14499
+
Leu
TAA
[ENA]
¡û
>W1911746056
QVQX01000010
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
28597
28683
+
Leu
TAA
[ENA]
¡û
>W1911748926
QWFD01000004
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
73530
73444
-
Leu
TAA
[ENA]
¡û
>W1911748968
QWFE01000004
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
73530
73444
-
Leu
TAA
[ENA]
¡û
>W1911775176
QXMK01000005
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
17917
18003
+
Leu
TAA
[ENA]
¡û
>W1911775178
QXMK01000006
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
76900
76814
-
Leu
TAA
[ENA]
¡û
>W1911775363
QXNB01000005
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
22412
22498
+
Leu
TAA
[ENA]
¡û
>W1911775379
QXNB01000016
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
21065
21151
+
Leu
TAA
[ENA]
¡û
>W1810058609
PDKA01000010
Campylobacterota
Arcobacter sp. FW59 [PDKA]
79683
79597
-
Leu
TAA
[ENA]
¡û
>W1810584102
QEYG01000028
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
3224
3138
-
Leu
TAA
[ENA]
¡û
>W1810584148
QEYH01000004
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
73530
73444
-
Leu
TAA
[ENA]
¡û
>W1810584187
QEYI01000002
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
108372
108286
-
Leu
TAA
[ENA]
¡û
>C11100373
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1464702
1464788
+
Leu
TAA
[Ensembl]
¡û
>C11100382
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1984524
1984610
+
Leu
TAA
[Ensembl]
¡û
>C11101049
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2035063
2035149
+
Leu
TAA
[Ensembl]
¡û
>W1510762830
JAIQ01000038
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
36801
36715
-
Leu
TAA
[ENA]
¡û
>W1510762863
JAIR01000037
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
21529
21615
+
Leu
TAA
[ENA]
¡û
>W1510762868
JAIR01000048
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
47
133
+
Leu
TAA
[ENA]
¡û
>W1510762899
JAIS01000041
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
21527
21613
+
Leu
TAA
[ENA]
¡û
>W1510762900
JAIS01000050
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
2
88
+
Leu
TAA
[ENA]
¡û
>W1510762914
JAIS01000090
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
118806
118720
-
Leu
TAA
[ENA]
¡û
>W1510762924
JAIT01000010
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
49
135
+
Leu
TAA
[ENA]
¡û
>W1510762936
JAIT01000028
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
100056
100142
+
Leu
TAA
[ENA]
¡û
>W1510762962
JAIU01000030
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
28823
28909
+
Leu
TAA
[ENA]
¡û
>W1510762973
JAIU01000062
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
95755
95669
-
Leu
TAA
[ENA]
¡û
>W1510762988
JAIV01000041
Campylobacterota
Aliarcobacter butzleri L354 [JAIV]
100310
100224
-
Leu
TAA
[ENA]
¡û
>W1510763011
JAIW01000010
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
49
135
+
Leu
TAA
[ENA]
¡û
>W1510763038
JAIW01000069
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
48324
48238
-
Leu
TAA
[ENA]
¡û
>W1510763053
JAIX01000027
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
89
3
-
Leu
TAA
[ENA]
¡û
>W1510763068
JAIX01000080
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
2
88
+
Leu
TAA
[ENA]
¡û
>W1510763071
JAIX01000084
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
2
88
+
Leu
TAA
[ENA]
¡û
>W11143303
AEPT01000038
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
20968
21054
+
Leu
TAA
[ENA]
¡û
>W11143314
AEPT01000065
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
17820
17906
+
Leu
TAA
[ENA]
¡û
>W11167749
AFNL01000006
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
57379
57293
-
Leu
TAA
[ENA]
¡û
>W11167757
AFNL01000014
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
11269
11355
+
Leu
TAA
[ENA]
¡û
>W1610896356
LRUQ01000095
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
36256
36342
+
Leu
TAA
[ENA]
¡û
>W1610896382
LRUR01000066
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
148078
148164
+
Leu
TAA
[ENA]
¡û
>W1610896401
LRUS01000081
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
14704
14618
-
Leu
TAA
[ENA]
¡û
>W1610896436
LRUT01000085
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
45968
46054
+
Leu
TAA
[ENA]
¡û
>W1610896469
LRUU01000083
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
146823
146909
+
Leu
TAA
[ENA]
¡û
>W1610896497
LRUV01000062
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
76986
76900
-
Leu
TAA
[ENA]
¡û
>W1610896519
LRUW01000048
Campylobacterota
Aliarcobacter skirrowii [LRUW]
69962
70048
+
Leu
TAA
[ENA]
¡û
>W1610896551
LRUX01000034
Campylobacterota
Aliarcobacter skirrowii [LRUX]
69081
68995
-
Leu
TAA
[ENA]
¡û
>W1610896587
LRUY01000083
Campylobacterota
Aliarcobacter skirrowii [LRUY]
54647
54733
+
Leu
TAA
[ENA]
¡û
>W1610896617
LRUZ01000040
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
36636
36722
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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