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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.76168 (70 seq.)
>C171131379
LT827128
Actinomycetota
Gordonibacter massiliensis [LT827128]
2710770
2710684
-
Leu
CAG
-
¡û
>W141001108
ADMD01000001
Actinomycetota
Slackia piriformis YIT 12062 [ADMD]
7689
7603
-
Leu
CAG
[ENA]
¡û
>WENV180141494
OATU01015622
[OATU] human gut metagenome; faeces
406
492
+
Leu
CAG
[ENA]
¢þ
>WENV180319293
OBKN01000404
[OBKN] human gut metagenome; human gut
11602
11516
-
Leu
CAG
[ENA]
¢þ
>WENV180337975
OBLG01280176
[OBLG] human gut metagenome; human gut
66
152
+
Leu
CAG
[ENA]
¢þ
>WENV180528568
OCHJ01008139
[OCHJ] human gut metagenome; human gut
2170
2256
+
Leu
CAG
[ENA]
¢þ
>WENV180575160
OCLX01130087
[OCLX] human gut metagenome; human gut
68
154
+
Leu
CAG
[ENA]
¢þ
>WENV180661239
OCVV011000061
[OCVV] gut metagenome; gut
14
100
+
Leu
CAG
[ENA]
¢þ
>WENV180661240
OCVV011000061
[OCVV] gut metagenome; gut
14
100
+
Leu
CAG
[ENA]
¢þ
>WENV181342636
OFMI01036604
[OFMI] human gut metagenome; human gut
709
795
+
Leu
CAG
[ENA]
¢þ
>WENV181349597
OFMO01000176
[OFMO] human gut metagenome; human gut
58707
58793
+
Leu
CAG
[ENA]
¢þ
>WENV181673924
OGOO01013684
[OGOO] human gut metagenome; faeces
1526
1440
-
Leu
CAG
[ENA]
¢þ
>WENV181795258
OGRS01053910
[OGRS] human gut metagenome; faeces
64
150
+
Leu
CAG
[ENA]
¢þ
>WENV181883694
OGXI01009582
[OGXI] human gut metagenome; faeces
2060
1974
-
Leu
CAG
[ENA]
¢þ
>WENV181994109
OHAS01011393
[OHAS] human gut metagenome; faeces
2731
2645
-
Leu
CAG
[ENA]
¢þ
>WENV182036030
OHDA01035429
[OHDA] human gut metagenome; feces
307
221
-
Leu
CAG
[ENA]
¢þ
>WENV182065387
OHFA01002748
[OHFA] human gut metagenome; feces
3097
3011
-
Leu
CAG
[ENA]
¢þ
>WENV182129576
OHJZ01017989
[OHJZ] human gut metagenome; feces
93
7
-
Leu
CAG
[ENA]
¢þ
>WENV182171850
OHMX01043412
[OHMX] human gut metagenome; feces
486
400
-
Leu
CAG
[ENA]
¢þ
>WENV182234601
OHRR01029287
[OHRR] human gut metagenome; feces
127
213
+
Leu
CAG
[ENA]
¢þ
>WENV182251125
OHST01006341
[OHST] human gut metagenome; feces
1529
1443
-
Leu
CAG
[ENA]
¢þ
>WENV182271924
OHUG01001247
[OHUG] human gut metagenome; feces
4826
4912
+
Leu
CAG
[ENA]
¢þ
>WENV182278755
OHUT01003544
[OHUT] human gut metagenome; feces
2480
2394
-
Leu
CAG
[ENA]
¢þ
>WENV182355455
OIBP01002503
[OIBP] human gut metagenome; feces
1810
1896
+
Leu
CAG
[ENA]
¢þ
>WENV182391645
OIEF01026141
[OIEF] human gut metagenome; human gut
828
914
+
Leu
CAG
[ENA]
¢þ
>WENV182518277
OIWP01000436
[OIWP] human gut metagenome; faeces
16792
16706
-
Leu
CAG
[ENA]
¢þ
>WENV182605213
OJJP01042584
[OJJP] metagenome; faeces
458
372
-
Leu
CAG
[ENA]
¢þ
>WENV182788281
OJSK01023316
[OJSK] human gut metagenome; human gut
313
227
-
Leu
CAG
[ENA]
¢þ
>WENV182873900
OKRW01001998
[OKRW] human gut metagenome; faeces
13015
13101
+
Leu
CAG
[ENA]
¢þ
>WENV183096949
OLNE01000493
[OLNE] human gut metagenome; faeces
12426
12340
-
Leu
CAG
[ENA]
¢þ
>WENV183100610
OLNG01000147
[OLNG] human gut metagenome; faeces
13097
13183
+
Leu
CAG
[ENA]
¢þ
>WENV183103302
OLNJ01000129
[OLNJ] human gut metagenome; faeces
12982
13068
+
Leu
CAG
[ENA]
¢þ
>WENV183140591
OLOJ01000022
[OLOJ] human gut metagenome; faeces
32294
32208
-
Leu
CAG
[ENA]
¢þ
>WENV183146131
OLOM01003584
[OLOM] human gut metagenome; faeces
2538
2452
-
Leu
CAG
[ENA]
¢þ
>WENV183164623
OLOX01000542
[OLOX] human gut metagenome; faeces
33174
33260
+
Leu
CAG
[ENA]
¢þ
>WENV183166660
OLOY01000456
[OLOY] human gut metagenome; faeces
16602
16516
-
Leu
CAG
[ENA]
¢þ
>WENV183168389
OLOZ01014704
[OLOZ] human gut metagenome; faeces
349
263
-
Leu
CAG
[ENA]
¢þ
>WENV183169889
OLPA01015388
[OLPA] human gut metagenome; faeces
2123
2037
-
Leu
CAG
[ENA]
¢þ
>WENV183170719
OLPB01000644
[OLPB] human gut metagenome; faeces
6816
6730
-
Leu
CAG
[ENA]
¢þ
>WENV183177015
OLPG01000130
[OLPG] human gut metagenome; faeces
12950
13036
+
Leu
CAG
[ENA]
¢þ
>WENV183189735
OLPQ01007752
[OLPQ] human gut metagenome; faeces
2209
2295
+
Leu
CAG
[ENA]
¢þ
>WENV183202595
OLPX01010176
[OLPX] human gut metagenome; faeces
510
424
-
Leu
CAG
[ENA]
¢þ
>WENV183205564
OLPZ01017230
[OLPZ] human gut metagenome; faeces
1203
1289
+
Leu
CAG
[ENA]
¢þ
>WENV183215241
OLQG01000452
[OLQG] human gut metagenome; faeces
31182
31268
+
Leu
CAG
[ENA]
¢þ
>WENV183220387
OLQL01000042
[OLQL] human gut metagenome; faeces
64926
64840
-
Leu
CAG
[ENA]
¢þ
>WENV183262256
OLRQ01001127
[OLRQ] human gut metagenome; faeces
19823
19909
+
Leu
CAG
[ENA]
¢þ
>WENV183286289
OLSE01006482
[OLSE] human gut metagenome; faeces
2476
2562
+
Leu
CAG
[ENA]
¢þ
>WENV183286427
OLSE01011974
[OLSE] human gut metagenome; faeces
1748
1834
+
Leu
CAG
[ENA]
¢þ
>WENV183291297
OLSI01000758
[OLSI] human gut metagenome; faeces
16574
16488
-
Leu
CAG
[ENA]
¢þ
>WENV183295909
OLSL01005576
[OLSL] human gut metagenome; faeces
1270
1356
+
Leu
CAG
[ENA]
¢þ
>WENV183297996
OLSM01023126
[OLSM] human gut metagenome; faeces
487
573
+
Leu
CAG
[ENA]
¢þ
>WENV183372266
OLXW01003261
[OLXW] human gut metagenome; feces
1075
989
-
Leu
CAG
[ENA]
¢þ
>WENV183404359
OLZW01014297
[OLZW] human gut metagenome; feces
2198
2284
+
Leu
CAG
[ENA]
¢þ
>WENV183423970
OMBG01015139
[OMBG] human gut metagenome; feces
1523
1609
+
Leu
CAG
[ENA]
¢þ
>WENV183447853
OMCS01041850
[OMCS] human gut metagenome; feces
422
508
+
Leu
CAG
[ENA]
¢þ
>WENV183648807
OQVS01041504
[OQVS] human gut metagenome; human gut
784
870
+
Leu
CAG
[ENA]
¢þ
>WENV183650513
OQVT01025229
[OQVT] human gut metagenome; human gut
1341
1427
+
Leu
CAG
[ENA]
¢þ
>WENV183792987
PPYF01468367
[PPYF] human gut metagenome; stool from patient with Crohn's disease
17
103
+
Leu
CAG
[ENA]
¢þ
>C191209635
LR134379
Actinomycetota
Slackia heliotrinireducens NCTC11029 [LR134379]
2791683
2791769
+
Leu
CAG
-
¡û
>W09109825
ABUP01000006
Actinomycetota
Slackia heliotrinireducens DSM 20476 [ABUP]
88228
88314
+
Leu
CAG
[ENA]
¡û
>W1910498704
FXXA01000002
Actinomycetota
Eggerthella timonensis Marseille-P3135 [FXXA]
316527
316441
-
Leu
CAG
[ENA]
¡û
>W1911502521
OEPT01000052
Actinomycetota
Raoultibacter timonensis Marseille-P3277 [OEPT]
48748
48662
-
Leu
CAG
[ENA]
¡û
>W1911679820
QIBV01000001
Actinomycetota
Gordonibacter urolithinfaciens JCM 16058 [QIBV]
333634
333720
+
Leu
CAG
[ENA]
¡û
>W1911679874
QIBW01000001
Actinomycetota
Gordonibacter urolithinfaciens DSM 27213 [QIBW]
190293
190207
-
Leu
CAG
[ENA]
¡û
>W1810240830
PPTS01000001
Actinomycetota
Gordonibacter pamelaeae 3C [PPTS]
90000
89914
-
Leu
CAG
[ENA]
¡û
>C151048610
CP009302
Actinomycetota
Berryella intestinalis 68-1-3 [CP009302]
241697
241783
+
Leu
CAG
[Ensembl]
¡û
>C10102871
CP001682
Actinomycetota
Cryptobacterium curtum DSM 15641 [CP001682]
398594
398508
-
Leu
CAG
[Ensembl]
¡û
>C10111631
CP001684
Actinomycetota
Slackia heliotrinireducens DSM 20476 [CP001684]
2904260
2904346
+
Leu
CAG
[Ensembl]
¡û
>C161103602
FP929047
Actinomycetota
Gordonibacter pamelaeae 7-10-1-b 7-10-1-bT [FP929047]
1193745
1193831
+
Leu
CAG
[Ensembl]
¡û
>W1710548862
FOEC01000002
Actinomycetota
Denitrobacterium detoxificans [FOEC]
89828
89742
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK