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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.76195 (53 seq.)
>W141242106
CAHY01000055
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
74225
74311
+
Leu
CAA
[ENA]
¡û
>WENV182541999
OJAV01000225
[OJAV] seawater metagenome; Sea water
2320
2406
+
Leu
CAA
[ENA]
¢þ
>WENV182542423
OJAY01000903
[OJAY] seawater metagenome; Sea water
4170
4256
+
Leu
CAA
[ENA]
¢þ
>WENV182542678
OJAZ01000479
[OJAZ] seawater metagenome; Sea water
16283
16369
+
Leu
CAA
[ENA]
¢þ
>WENV182543383
OJBB01000007
[OJBB] seawater metagenome; Sea water
87661
87747
+
Leu
CAA
[ENA]
¢þ
>WENV182543657
OJBC01000106
[OJBC] seawater metagenome; Sea water
15978
16064
+
Leu
CAA
[ENA]
¢þ
>WENV182547032
OJBR01000212
[OJBR] seawater metagenome; Sea water
15393
15479
+
Leu
CAA
[ENA]
¢þ
>WENV182549890
OJBZ01000244
[OJBZ] seawater metagenome; Sea water
24340
24254
-
Leu
CAA
[ENA]
¢þ
>WENV182552501
OJCK01000954
[OJCK] seawater metagenome; Sea water
118
32
-
Leu
CAA
[ENA]
¢þ
>WENV182553264
OJCR01001055
[OJCR] seawater metagenome; Sea water
1734
1820
+
Leu
CAA
[ENA]
¢þ
>WENV182555005
OJCY01000373
[OJCY] seawater metagenome; Sea water
10903
10989
+
Leu
CAA
[ENA]
¢þ
>WENV182555742
OJDD01000232
[OJDD] seawater metagenome; Sea water
4423
4509
+
Leu
CAA
[ENA]
¢þ
>WENV182557153
OJDI01001350
[OJDI] seawater metagenome; Sea water
748
834
+
Leu
CAA
[ENA]
¢þ
>WENV182559301
OJDO01013038
[OJDO] seawater metagenome; Sea water
733
647
-
Leu
CAA
[ENA]
¢þ
>WENV182562285
OJDZ01000431
[OJDZ] seawater metagenome; Sea water
11632
11546
-
Leu
CAA
[ENA]
¢þ
>WENV182564867
OJEF01011466
[OJEF] seawater metagenome; Sea water
1132
1218
+
Leu
CAA
[ENA]
¢þ
>WENV182566242
OJEJ01002799
[OJEJ] seawater metagenome; Sea water
522
436
-
Leu
CAA
[ENA]
¢þ
>WENV182566710
OJEM01000614
[OJEM] seawater metagenome; Sea water
4848
4934
+
Leu
CAA
[ENA]
¢þ
>WENV182567651
OJEP01000011
[OJEP] seawater metagenome; Sea water
81047
81133
+
Leu
CAA
[ENA]
¢þ
>WENV182568746
OJEW01005627
[OJEW] seawater metagenome; Sea water
341
255
-
Leu
CAA
[ENA]
¢þ
>WENV182571050
OJFG01000140
[OJFG] seawater metagenome; Sea water
16283
16369
+
Leu
CAA
[ENA]
¢þ
>WENV182572049
OJFL01000174
[OJFL] seawater metagenome; Sea water
14009
14095
+
Leu
CAA
[ENA]
¢þ
>WENV182573179
OJFP01000290
[OJFP] seawater metagenome; Sea water
14009
14095
+
Leu
CAA
[ENA]
¢þ
>WENV182574956
OJFS01011128
[OJFS] seawater metagenome; Sea water
87
1
-
Leu
CAA
[ENA]
¢þ
>WENV182577041
OJGC01000967
[OJGC] seawater metagenome; Sea water
3640
3726
+
Leu
CAA
[ENA]
¢þ
>WENV182577672
OJGH01000505
[OJGH] seawater metagenome; Sea water
1443
1357
-
Leu
CAA
[ENA]
¢þ
>WENV182578444
OJGO01000015
[OJGO] seawater metagenome; Sea water
87661
87747
+
Leu
CAA
[ENA]
¢þ
>WENV182579446
OJGS01010408
[OJGS] seawater metagenome; Sea water
475
561
+
Leu
CAA
[ENA]
¢þ
>WENV182580208
OJGU01015784
[OJGU] seawater metagenome; Sea water
477
391
-
Leu
CAA
[ENA]
¢þ
>WENV182580648
OJGW01005828
[OJGW] seawater metagenome; Sea water
597
683
+
Leu
CAA
[ENA]
¢þ
>WENV182581128
OJGX01000201
[OJGX] seawater metagenome; Sea water
5049
4963
-
Leu
CAA
[ENA]
¢þ
>WENV182582790
OJHC01000113
[OJHC] seawater metagenome; Sea water
24661
24575
-
Leu
CAA
[ENA]
¢þ
>WENV182584474
OJHG01000461
[OJHG] seawater metagenome; Sea water
118
32
-
Leu
CAA
[ENA]
¢þ
>WENV182585745
OJHI01004346
[OJHI] seawater metagenome; Sea water
1110
1024
-
Leu
CAA
[ENA]
¢þ
>WENV182586131
OJHJ01002805
[OJHJ] seawater metagenome; Sea water
1077
991
-
Leu
CAA
[ENA]
¢þ
>WENV182586336
OJHK01000083
[OJHK] seawater metagenome; Sea water
29626
29540
-
Leu
CAA
[ENA]
¢þ
>WENV182591017
OJIK01011946
[OJIK] seawater metagenome; Sea water
1122
1208
+
Leu
CAA
[ENA]
¢þ
>WENV182592711
OJIR01012102
[OJIR] seawater metagenome; Sea water
1405
1319
-
Leu
CAA
[ENA]
¢þ
>WENV183055301
OLGX01001579
[OLGX] seawater metagenome; Sea water
1193
1279
+
Leu
CAA
[ENA]
¢þ
>WENV183057421
OLHL01001738
[OLHL] seawater metagenome; Sea water
6631
6717
+
Leu
CAA
[ENA]
¢þ
>WENV183058064
OLHN01001967
[OLHN] seawater metagenome; Sea water
1601
1687
+
Leu
CAA
[ENA]
¢þ
>WENV170298742
CESF01235643
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
287
373
+
Leu
CAA
[ENA]
¢þ
>WENV170704598
LLEL01005969
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
369
283
-
Leu
CAA
[ENA]
¢þ
>WENV170940789
MDTG01349193
[MDTG] marine metagenome; seawater
7126
7040
-
Leu
CAA
[ENA]
¢þ
>W1911641220
PYHU01000022
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
27913
27827
-
Leu
CAA
[ENA]
¡û
>C11100882
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
331154
331068
-
Leu
CAA
[Ensembl]
¡û
>C161051442
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
320437
320351
-
Leu
CAA
[Ensembl]
¡û
>C161062062
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
3756596
3756682
+
Leu
CAA
-
¡û
>C161062235
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
3791750
3791836
+
Leu
CAA
-
¡û
>C161062283
CP013933
Gammaproteobacteria
Alteromonas sp. Mac2 [CP013933]
3767568
3767654
+
Leu
CAA
-
¡û
>C161071051
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
3763038
3763124
+
Leu
CAA
-
¡û
>C161086285
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
2048763
2048677
-
Leu
CAA
-
¡û
>C161086291
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
1417226
1417312
+
Leu
CAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK