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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.76208 (35 seq.)
>W1710865264
LMGN01000020
Alphaproteobacteria
Rhizobium sp. Root564 [LMGN]
301918
302004
+
Leu
CAG
[ENA]
¡û
>W1711214202
LXKY01000001
Alphaproteobacteria
Agrobacterium tumefaciens [LXKY]
1819356
1819442
+
Leu
CAG
[ENA]
¡û
>W1711722523
MTKI01000004
Alphaproteobacteria
Agrobacterium tumefaciens [MTKI]
164920
164834
-
Leu
CAG
[ENA]
¡û
>W1711959702
NBZF01000002
Alphaproteobacteria
Agrobacterium tumefaciens [NBZF]
166920
166834
-
Leu
CAG
[ENA]
¡û
>W131044403
AMQQ01000030
Alphaproteobacteria
Bradyrhizobium lupini HPC(L) [AMQQ]
88913
88999
+
Leu
CAG
[ENA]
¡û
>W131160089
AQWH01000012
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
6332
6418
+
Leu
CAG
[ENA]
¡û
>WENV181193114
OEPS011467909
[OEPS] soil metagenome; soil
83
169
+
Leu
CAG
[ENA]
¢þ
>WENV182547937
OJBU01003165
[OJBU] seawater metagenome; Sea water
1084
998
-
Leu
CAG
[ENA]
¢þ
>WENV182549525
OJBY01001705
[OJBY] seawater metagenome; Sea water
3323
3237
-
Leu
CAG
[ENA]
¢þ
>WENV182563795
OJED01000087
[OJED] seawater metagenome; Sea water
10351
10265
-
Leu
CAG
[ENA]
¢þ
>WENV183727984
PJTP01012480
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
498
412
-
Leu
CAG
[ENA]
¢þ
>WENV183735329
PJUA01012449
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
58
144
+
Leu
CAG
[ENA]
¢þ
>WENV170585585
FUFK010304399
[FUFK] metagenome; unknown
494
580
+
Leu
CAG
[ENA]
¢þ
>WENV170590414
FUFK010719285
[FUFK] metagenome; unknown
3510
3596
+
Leu
CAG
[ENA]
¢þ
>WENV170938301
MDTG01306390
[MDTG] marine metagenome; seawater
286
200
-
Leu
CAG
[ENA]
¢þ
>WENV170958586
MKWU01001416
[MKWU] sponge metagenome;
22740
22654
-
Leu
CAG
[ENA]
¢þ
>C191097633
CP032917
Alphaproteobacteria
Agrobacterium tumefaciens 15955 [CP032917, CP032918]
2681792
2681706
-
Leu
CAG
-
¡û
>C191097689
CP032921
Alphaproteobacteria
Agrobacterium tumefaciens 1D1108 [CP032921, CP032922]
2714746
2714660
-
Leu
CAG
-
¡û
>C191097745
CP032926
Alphaproteobacteria
Agrobacterium tumefaciens 1D1460 [CP032926, CP032927]
2779893
2779807
-
Leu
CAG
-
¡û
>C191150365
CP036358
Alphaproteobacteria
Agrobacterium sp. 33MFTa1.1 [CP036358, CP036359]
2685004
2684918
-
Leu
CAG
-
¡û
>C191172819
CP039894
Alphaproteobacteria
Agrobacterium pusense CFBP5875 [CP039894, CP039895]
2753090
2753004
-
Leu
CAG
-
¡û
>C191173140
CP039922
Alphaproteobacteria
Agrobacterium tumefaciens CFBP7129 [CP039922, CP039923]
2760861
2760775
-
Leu
CAG
-
¡û
>W141564603
JIAX01000006
Alphaproteobacteria
Ahrensia sp. 13_GOM-1096m [JIAX]
106887
106801
-
Leu
CAG
[ENA]
¡û
>W1910199562
FBWD01000001
Alphaproteobacteria
Agrobacterium deltaense 7 str. RV3 [FBWD]
179469
179383
-
Leu
CAG
[ENA]
¡û
>W1910199724
FBWG01000019
Alphaproteobacteria
Agrobacterium deltaense 7 str. Zutra 3/1 Zutra 3-1 [FBWG]
426334
426420
+
Leu
CAG
[ENA]
¡û
>W1910200023
FCNL01000020
Alphaproteobacteria
Agrobacterium tumefaciens str. B6 [FCNL]
172898
172812
-
Leu
CAG
[ENA]
¡û
>W1810366477
PVWT01000001
Alphaproteobacteria
Agrobacterium pusense S1 [PVWT]
178616
178530
-
Leu
CAG
[ENA]
¡û
>W1511480690
JWJH01000004
Alphaproteobacteria
Rhizobium nepotum Jul-39 [JWJH]
165527
165441
-
Leu
CAG
[ENA]
¡û
>W1610020949
ASXZ01000001
Alphaproteobacteria
Agrobacterium sp. JL28 [ASXZ]
804510
804596
+
Leu
CAG
[ENA]
¡û
>W1610020997
ASYA01000001
Alphaproteobacteria
Agrobacterium sp. LY4 [ASYA]
167345
167259
-
Leu
CAG
[ENA]
¡û
>W1610727610
LMGN01000020
Alphaproteobacteria
Rhizobium sp. Root564 [LMGN]
301918
302004
+
Leu
CAG
[ENA]
¡û
>W1611001206
LXKY01000001
Alphaproteobacteria
Agrobacterium tumefaciens [LXKY]
1819356
1819442
+
Leu
CAG
[ENA]
¡û
>W1710017661
ASXZ01000001
Alphaproteobacteria
Agrobacterium sp. JL28 [ASXZ]
804510
804596
+
Leu
CAG
[ENA]
¡û
>W1710017709
ASYA01000001
Alphaproteobacteria
Agrobacterium sp. LY4 [ASYA]
167345
167259
-
Leu
CAG
[ENA]
¡û
>W1710698068
LAZS01000006
Alphaproteobacteria
Ensifer adhaerens [LAZS]
932522
932436
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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