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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.76223 (48 seq.)
>W1711229364
LXYJ01000019
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
51435
51521
+
Leu
CAG
[ENA]
¡û
>W1711229621
LXYP01000022
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
32791
32877
+
Leu
CAG
[ENA]
¡û
>W1711621281
MPCY01000103
Alphaproteobacteria
Roseobacter sp. MedPE-SW [MPCY]
12396
12310
-
Leu
CAG
[ENA]
¡û
>W1711621351
MPDA01000011
Alphaproteobacteria
Roseobacter sp. MedPE-SWde [MPDA]
12343
12257
-
Leu
CAG
[ENA]
¡û
>C171118948
CP021431
Alphaproteobacteria
Yoonia vestfoldensis SMR4r [CP021431]
3352074
3352160
+
Leu
CAG
-
¡û
>W131045373
AMRK01000001
Alphaproteobacteria
Celeribacter baekdonensis B30 [AMRK]
429512
429598
+
Leu
CAG
[ENA]
¡û
>C011103
CP000264
Alphaproteobacteria
Jannaschia sp. CCS1 [CP000264]
237080
236994
-
Leu
CAG
[Ensembl]
¡û
>w023596
AAXZ01000008
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2150 HTCC2150 [AAXZ]
63595
63683
+
Leu
CAG
[ENA]
¡û
>w012720
AAMS01000001
Alphaproteobacteria
Yoonia vestfoldensis SKA53 [AAMS]
434668
434756
+
Leu
CAG
[ENA]
¡û
>WENV180214583
OBAP01016240
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
347
261
-
Leu
CAG
[ENA]
¢þ
>W141151650
AXBF01000002
Alphaproteobacteria
Pseudophaeobacter arcticus DSM 23566 [AXBF]
2287942
2287856
-
Leu
CAG
[ENA]
¡û
>W141151670
AXBF01000003
Alphaproteobacteria
Pseudophaeobacter arcticus DSM 23566 [AXBF]
859156
859070
-
Leu
CAG
[ENA]
¡û
>WENV182551139
OJCB01031024
[OJCB] seawater metagenome; Sea water
756
670
-
Leu
CAG
[ENA]
¢þ
>WENV182592954
OJIS01002490
[OJIS] seawater metagenome; Sea water
3105
3191
+
Leu
CAG
[ENA]
¢þ
>WENV170024187
BCQL01028983
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
654
740
+
Leu
CAG
[ENA]
¢þ
>WENV170121124
CENL01052500
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1124
1038
-
Leu
CAG
[ENA]
¢þ
>WENV170271539
CERJ01030195
[CERJ] marine metagenome genome assembly TARA_066_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
537
451
-
Leu
CAG
[ENA]
¢þ
>WENV170625516
FUWD013199654
[FUWD] metagenome; unknown
1033
1119
+
Leu
CAG
[ENA]
¢þ
>WENV170625517
FUWD013199655
[FUWD] metagenome; unknown
207
293
+
Leu
CAG
[ENA]
¢þ
>WENV170633745
FUWD013402010
[FUWD] metagenome; unknown
1033
1119
+
Leu
CAG
[ENA]
¢þ
>WENV170633746
FUWD013402011
[FUWD] metagenome; unknown
207
293
+
Leu
CAG
[ENA]
¢þ
>WENV170783025
MAAC01013017
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
5283
5197
-
Leu
CAG
[ENA]
¢þ
>WENV170783886
MAAC01019382
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
10620
10706
+
Leu
CAG
[ENA]
¢þ
>C191160507
CP038492
Alphaproteobacteria
Rhodophyticola sp. CCM32 [CP038492]
3262850
3262936
+
Leu
CAG
-
¡û
>C191184389
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
214452
214538
+
Leu
CAG
-
¡û
>W09102729
AAIG01000001
Alphaproteobacteria
Jannaschia sp. CCS1 [AAIG]
739778
739692
-
Leu
CAG
[ENA]
¡û
>W09111641
ABXE01000006
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2083 HTCC2083 [ABXE]
18072
18158
+
Leu
CAG
[ENA]
¡û
>W1910443217
FWFW01000012
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
9827
9741
-
Leu
CAG
[ENA]
¡û
>W1910499072
FXXQ01000011
Alphaproteobacteria
Boseongicola aestuarii CECT 8489 [FXXQ]
3296
3210
-
Leu
CAG
[ENA]
¡û
>W1910499738
FXYE01000002
Alphaproteobacteria
Actibacterium lipolyticum CECT 8621 [FXYE]
1523155
1523241
+
Leu
CAG
[ENA]
¡û
>W1911539315
OMPS01000024
Alphaproteobacteria
Ruegeria sp. EL01 [OMPS]
673
587
-
Leu
CAG
[ENA]
¡û
>W1911539934
ONZJ01000002
Alphaproteobacteria
Rhodobacteraceae bacterium EL129 [ONZJ]
3706660
3706574
-
Leu
CAG
[ENA]
¡û
>W1911696561
QMEK01000002
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
171458
171544
+
Leu
CAG
[ENA]
¡û
>W1810503375
QBKA01000002
Alphaproteobacteria
Alteripontixanthobacter maritimus HME9302 [QBKA]
2121718
2121632
-
Leu
CAG
[ENA]
¡û
>W1810685711
QKZM01000038
Alphaproteobacteria
Planktotalea frisia DSM 23709 [QKZM]
1015
929
-
Leu
CAG
[ENA]
¡û
>SRA1030208
SRR035087.242672
454 Sequencing (SRP001808)
207
293
+
Leu
CAG
[SRA]
>SRA1031697
SRR035087.473375
454 Sequencing (SRP001808)
345
431
+
Leu
CAG
[SRA]
>C161087756
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
615076
615162
+
Leu
CAG
[Ensembl]
¡û
>W1610092699
CYSA01000007
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [CYSA]
260933
261019
+
Leu
CAG
[ENA]
¡û
>W1610093000
CYSG01000003
Alphaproteobacteria
Phaeobacter sp. CECT 5382 [CYSG]
329622
329708
+
Leu
CAG
[ENA]
¡û
>W1610093026
CYSG01000023
Alphaproteobacteria
Phaeobacter sp. CECT 5382 [CYSG]
40480
40566
+
Leu
CAG
[ENA]
¡û
>W1611013234
LXYJ01000019
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
51435
51521
+
Leu
CAG
[ENA]
¡û
>W1611013491
LXYP01000022
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
32791
32877
+
Leu
CAG
[ENA]
¡û
>W1710015344
AQQP01000002
Alphaproteobacteria
Phaeobacter sp. 22II1-1F12B [AQQP]
449989
450075
+
Leu
CAG
[ENA]
¡û
>W1710095954
CYSA01000007
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [CYSA]
260933
261019
+
Leu
CAG
[ENA]
¡û
>W1710543300
FNZV01000012
Alphaproteobacteria
Pacificibacter marinus [FNZV]
23478
23392
-
Leu
CAG
[ENA]
¡û
>W1710543308
FNZV01000027
Alphaproteobacteria
Pacificibacter marinus [FNZV]
11548
11462
-
Leu
CAG
[ENA]
¡û
>W1710577532
FPAW01000038
Alphaproteobacteria
Sedimentitalea nanhaiensis [FPAW]
2453
2367
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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